PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125679.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 782aa    MW: 86688.9 Da    PI: 6.7127
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.74.7e-22230282154
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                     k +l W+  LH+ F++a++++ G +kA+Pk+ile+m+v  Lt+e+v+SHLQkYR
  XP_009125679.1 230 KSKLSWSDYLHDLFLQAIHHI-GLDKAVPKKILEFMDVSYLTRENVASHLQKYR 282
                     679******************.******************************** PP
2Response_reg67.65.8e-23181321109
                     EEEESSSHHHHHHHHHHHHHTTC....EEEE..EESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegy....eeva..eaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                     +++vdD+p+ re++ ++le+++y    +e++  +++d++eal +l  +++++Dli++D  mpgm+Gl+l ++i+++  + p+iv+++  +    +
  XP_009125679.1  18 IMVVDDDPVSREIVSRMLERSKYrdpsMEITviAVRDAREALSTLkiQRNNIDLIVTDYYMPGMNGLQLKQQITRQFGNFPVIVMSSDTN--KEQ 110
                     89*****************8777555533333599********99445555**********************99999********7766..678 PP

                     HHHHTTESEEEESS--HHHHHH CS
    Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                     e l  G   fl Kp++p +l k
  XP_009125679.1 111 ESLACGSVCFLPKPIKPTDLPK 132
                     99****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.7E-2715143No hitNo description
SMARTSM004484.8E-2216134IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.28E-2516147IPR011006CheY-like superfamily
PROSITE profilePS5011034.11117138IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.7E-2018133IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.87E-2419130No hitNo description
Gene3DG3DSA:1.10.10.601.6E-22228287IPR009057Homeodomain-like
SuperFamilySSF466897.88E-16228287IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-24230284IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MTFAQSLNNQ SSVLRINIMV VDDDPVSREI VSRMLERSKY RDPSMEITVI AVRDAREALS  60
TLKIQRNNID LIVTDYYMPG MNGLQLKQQI TRQFGNFPVI VMSSDTNKEQ ESLACGSVCF  120
LPKPIKPTDL PKIYQVAFTY KRKGKSISRT EHNHMDTNVS IPQQIQLLPE QANVSKTKKN  180
KEFSSKSDSR SVNSFNGSCD STDGSRKNRK RKSNGDFGDD DESLPQPSKK SKLSWSDYLH  240
DLFLQAIHHI GLDKAVPKKI LEFMDVSYLT RENVASHLQK YRNFLRKVAE NSGMLHGRGM  300
EPYHSNYTTS SSWYDTGLNN KSSYSKPRHG LGQSRLLSNT CEPVRFNQMP YNHMNRLSTY  360
EPHRTGSNLT MPIKSNLSFS TQPLQNEGSR SFLEPTVTAN KTGQTSQVLG FGQHGMLAIN  420
GNNFNDNTMS SYASSTSNQP RINSHGSSTP NQPGLRSYGC SISNQPGMSS YASVSPNQLG  480
MSSYGSLTPY QRGMSSLGSF TPTQPGMSSH RSLTPTQQGM SSYGSLSPSQ PGVSTQPGMS  540
SKGSLTPTQR GMSSYGSLTS YQPALSTHGS LFPNQPGISS HTSLPPTQPG MSSFGSLTTN  600
HSGMSSYESL TPTQPGPSNI SYGLLLNNEN TAYKPQPHAS TTIQLDNLSM YDDLGNINEI  660
PCDLSNFDFD HDKQQEEAVS ANKFEIPANL ETELNQTSSL EEDGDWTFLN ISQGHFNEKT  720
SNTFAAPETN DPTFNKNPNH AQEQDVPDFD WSLLDLENLA NENDFMDSMF TNDNSMFTND  780
MN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17229289464ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in siliques. Also found in germinating seedlings, stems, flowers and roots, but not in rosette leaves. {ECO:0000269|PubMed:15173562, ECO:0000269|Ref.3}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125679.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125679.10.0PREDICTED: putative two-component response regulator ARR21 isoform X1
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLA0A3P5ZXT10.0A0A3P5ZXT1_BRACM; Uncharacterized protein
STRINGBra028705.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21