PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125662.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 375aa    MW: 42265 Da    PI: 7.1877
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32194248155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  XP_009125662.1 194 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 248
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-28193249IPR009057Homeodomain-like
SuperFamilySSF466894.48E-17193248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23194249IPR006447Myb domain, plants
PfamPF002491.3E-8198247IPR001005SANT/Myb domain
PfamPF143793.1E-20278325IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDNINFETSN ASQGSRLHLH SQSQPPQLFN LQDVNMNHYN QSSPWTSETF SGYTPYDSTV  60
NQSLSVQCSS SKPCHALFHP YHHQSSDHPS VDQSQSMVPM QLLQDQYLKP LYQKSCANDF  120
AATNASSSSY SLSFDASQDP QELCRRTYST SNVTQLDFSS SHHQAKQTHP RFSSHSFSAH  180
GGSMAPNCGT VGNKTRIRWT QDLHEKFVEC VNRLGGADKA TPKAILKLMD SEGLTIFHVK  240
SHLQKYRIAK YIPDYQEGKF EKGSCSKELS QLDTKTGVQI KEALQLQLDV QRHLHEQLEI  300
QRNLQLRIEE QGKQLKIMIE QQQKTKECLL LKSPNAEASL SHSASDHSPP PYSIQDAEAL  360
LLTTYGDTQF QSKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-23194251259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-23194251259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-23194251259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-23194251259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-23194251259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-23194251259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-23194251259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-23194251259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125662.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125662.10.0PREDICTED: myb family transcription factor PHL5-like
SwissprotQ0WVU30.0PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLM4EIV20.0M4EIV2_BRARP; Uncharacterized protein
STRINGBra028717.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-179G2-like family protein