PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009124676.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 28990.7 Da PI: 7.8391 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 8.8e-16 | 35 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eE e+l+ + q G ++W++I++ g+ R++k+c++rw +yl XP_009124676.1 35 RGPWSDEESEILKAFILQNGHRNWRSIPKLAGLMRCGKSCRLRWVNYL 82 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 88 | 132 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++++++ lG++ W++Ia+++g Rt++++k+ w+++l XP_009124676.1 88 RGNFTKEEEDTIIHLHQTLGNK-WSKIASHLG--RTDNEIKNVWNTHL 132 89********************.********8..***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.371 | 30 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.81E-25 | 34 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-11 | 34 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 35 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 36 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.51E-8 | 37 | 82 | No hit | No description |
PROSITE profile | PS51294 | 23.365 | 83 | 136 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-14 | 87 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 88 | 132 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 90 | 135 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.17E-8 | 90 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MNISYQILQK LKSVFVSVMG KGKAPCCDHS QVLKRGPWSD EESEILKAFI LQNGHRNWRS 60 IPKLAGLMRC GKSCRLRWVN YLRPGLKRGN FTKEEEDTII HLHQTLGNKW SKIASHLGRT 120 DNEIKNVWNT HLKKRSMKSN SSASSDVTNQ APSVSRSSSS SSSSSVSNNV IKSEKLNQEE 180 ELEEILVEDM ACGFEVNAPQ SLESLFEDRK VPPPITKPDS LEIRGKSDDE LCRQMVEPGL 240 DDYNEWLNYF DNQTF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-20 | 33 | 135 | 5 | 107 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cauline leaves and siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in metal ions homeostasis, including iron ions (Fe) acquisition, via the regulation of NAS4 and NAS2 genes expression. Necessary for plant survival in alkaline soil where iron availability is greatly restricted. Triggers tolerance to nickel (Ni) and zinc (Zn) ions. {ECO:0000269|PubMed:24278034}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009124676.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in the root stele and in the outer layers of the lateral roots when exposed to iron (Fe)-deficient conditions (PubMed:24278034). Slightly induced by ethylene and by darkness conditions (PubMed:9839469). Accumulates upon potassium (K) depletion (PubMed:15489280). Induced by zinc (Zn) and cadmium (Cd) ions (PubMed:18088336). {ECO:0000269|PubMed:15489280, ECO:0000269|PubMed:18088336, ECO:0000269|PubMed:24278034, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009124676.2 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Refseq | XP_022547794.1 | 0.0 | transcription factor MYB58-like | ||||
Swissprot | Q9LTV4 | 1e-116 | MYB10_ARATH; Transcription factor MYB10 | ||||
TrEMBL | A0A078I1B4 | 1e-175 | A0A078I1B4_BRANA; BnaA01g30300D protein | ||||
TrEMBL | M4FE23 | 1e-175 | M4FE23_BRARP; Uncharacterized protein | ||||
STRING | Bra039344.1-P | 1e-176 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14096 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12820.1 | 1e-101 | myb domain protein 10 |
Publications ? help Back to Top | |||
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