PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009123213.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 346aa    MW: 38440 Da    PI: 5.1988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009123213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-102723121055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_009123213.1 272 QKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 312
                     89*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.183262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-8268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-12272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-13272327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-10272316No hitNo description
PfamPF000108.9E-8272312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEAMGEWSTG LGGMYTDEAD FMNQLLASYD QPCGVSSPET TAPAAAYHPQ NAHLTGGFCF  60
SQESSSYSAG HSGYYAVMPP REENNNGMED VTINTNLYLV GEEMCECELA EYSAKSLLPL  120
ETAEENQDDN KRSLETEDDQ KLFNACESSK KRTRAITTDK NKRASKTRKT KKIMEMSDNN  180
NNSGGEVHTE KAGGERHTKA LKIQKTCYSD DEANGGDTSS CKEGGEDCKA LNLNGKTRAS  240
RGAATDPQSL YARKISYVRL KTKTKTDLMT VQKRRERINE RLKILQNLVP NGTKVDISTM  300
LEEAVQYVKF LQLQIKLLSS DDLWMYAPIA YNGMDIGLDM KLNSLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009123213.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775847e-72AJ577584.1 Arabidopsis thaliana mRNA for putative bHLH084 transcription factor (bHLH084 gene).
GenBankDQ4464977e-72DQ446497.1 Arabidopsis thaliana clone pENTR221-At2g14760 basic helix-loop-helix protein/bHLH protein (At2g14760) mRNA, complete cds.
GenBankDQ6529857e-72DQ652985.1 Arabidopsis thaliana clone 0000009730_0000007191 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123213.10.0PREDICTED: transcription factor bHLH84 isoform X1
SwissprotQ7XHI91e-171BH084_ARATH; Transcription factor bHLH84
TrEMBLM4FFE60.0M4FFE6_BRARP; Uncharacterized protein
STRINGBra039819.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.31e-171bHLH family protein