PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009122614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 228aa MW: 24151.9 Da PI: 9.3431 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00046 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k Fs+ L H +H XP_009122614.1 87 HKCSVCDKAFSSYQALGGHKASH 109 79**********99999998887 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0016 | 146 | 165 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+ksF + L H XP_009122614.1 146 HVCSICNKSFATGQALGGHK 165 79********9988776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.05E-8 | 86 | 109 | No hit | No description |
SMART | SM00355 | 0.02 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.2E-13 | 87 | 111 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.868 | 87 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.05E-8 | 141 | 168 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 144 | 169 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.073 | 146 | 168 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.325 | 146 | 173 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.3E-12 | 146 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 148 | 168 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055062 | Biological Process | phosphate ion homeostasis | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001047 | Molecular Function | core promoter binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MALEALSSPR LASPVPTLFQ DSAVGFHGSK GKRSKRSRSE FDRSLTEDEY IALCLMLLAR 60 DGNRTRHLPS SSSSPPLLPT LTSTHLHKCS VCDKAFSSYQ ALGGHKASHR KNSSQTQSSG 120 GDEKSTSSAI TIASHGGGGG GSVKSHVCSI CNKSFATGQA LGGHKRCHYE GKNGSSSEGV 180 GSTSHVSSGS HHHHRGFDLN IPPIPEFSTV NGEEEVMSPM PTKKLRLE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.1137 | 0.0 | leaf| root| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates root development and phosphate (Pi) acquisition and homeostasis. Probably acts as a repressor of primary root growth and regulates Pi homeostasis through the control of root architecture. {ECO:0000269|PubMed:17631527}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00622 | PBM | Transfer from AT5G04340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009122614.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment and during Pi starvation. {ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:17631527}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ178980 | 0.0 | DQ178980.1 Brassica napus C2H2-type zinc finger protein (ZF2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009122614.1 | 1e-165 | PREDICTED: zinc finger protein ZAT6 | ||||
Swissprot | O22533 | 1e-107 | ZAT6_ARATH; Zinc finger protein ZAT6 | ||||
TrEMBL | A0A397XQR5 | 1e-163 | A0A397XQR5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CZ17 | 1e-163 | M4CZ17_BRARP; Uncharacterized protein | ||||
STRING | Bra009464.1-P | 1e-164 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1211 | 28 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04340.1 | 4e-88 | zinc finger of Arabidopsis thaliana 6 |