PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120725.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 510aa    MW: 58066.2 Da    PI: 7.3119
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120725.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3349.47.6e-107454051354
                     XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 
                     eel+k+ wkd+++lk+lke++k+ l++++      k+    e++r++ m +aQDgiLkYM k+me c+a+GfvYg + e+g++v+g+sd+Lr+WW
  XP_009120725.1  45 EELEKKIWKDKQRLKKLKEMSKNGLGRASL-----KQPPDDEHSRKRMMYQAQDGILKYMSKTMERCKAKGFVYGVVFENGRTVTGSSDNLRGWW 134
                     8**********************9866655.....678999****************************************************** PP

                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT- CS
            EIN3  96 kekvefdrngpaaiskyqaknlilsgessl..qte..rsseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelgl 186
                     +++v+fdrngpaai k+q + +++s + +   ++e  +  + h+l elqDTtlg+LLsalm  c+ppqrr+plekgv+pPWWPtGke+wwg l l
  XP_009120725.1 135 RDQVRFDRNGPAAILKHQREINLSSTDGNElgSSEdgGDCTAHKLLELQDTTLGALLSALMPNCKPPQRRYPLEKGVPPPWWPTGKEDWWGDLPL 229
                     *****************8887777654433243331156789***************************************************** PP

                     -TT--...-----GGG--HHHHHHHHHHHHHHT.GGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX..XXXX.....XX CS
            EIN3 187 skdqg..tppykkphdlkkawkvsvLtavikhm.sptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss..slrk.....qs 271
                     +   +  +p y+kph lkk+wkv++L  vi+hm + +i+ i +l+ +s+ lq+km+++e   +l+ ln+e++++a+ + ++   s  +     ++
  XP_009120725.1 230 PDGCRghPPAYRKPHGLKKMWKVGILIGVIRHMmASDITDIVKLVGRSRTLQEKMTSREGSLWLAALNREKAIAAQSQKQPLtfS--EedgtgGE 322
                     ****999*************************85799**********************************99999988844331..22344588 PP

                     XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS
            EIN3 272 pkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqney 354
                      +  + + ++++veg   ++ +  q+ +  ++ ++++  ++k++ +      ++  tc++s +++s +e++f+d+  ++++++
  XP_009120725.1 323 MDALFPEPADYEVEGSVGPRHRLNQQFHGFDNNNFNSGYNNKRRFEGESLHPGTNLTCENSPCPYSRPEMGFNDRVLRENHQM 405
                     889999999*****888888777888887776666665555556666666667789*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.2E-10345300No hitNo description
Gene3DG3DSA:1.10.3180.102.5E-55173307IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.05E-48176303IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MYNTNIGMFP TLVTSPVPRF PEGETCFASP NATCNDPTEE EMEIEELEKK IWKDKQRLKK  60
LKEMSKNGLG RASLKQPPDD EHSRKRMMYQ AQDGILKYMS KTMERCKAKG FVYGVVFENG  120
RTVTGSSDNL RGWWRDQVRF DRNGPAAILK HQREINLSST DGNELGSSED GGDCTAHKLL  180
ELQDTTLGAL LSALMPNCKP PQRRYPLEKG VPPPWWPTGK EDWWGDLPLP DGCRGHPPAY  240
RKPHGLKKMW KVGILIGVIR HMMASDITDI VKLVGRSRTL QEKMTSREGS LWLAALNREK  300
AIAAQSQKQP LTFSEEDGTG GEMDALFPEP ADYEVEGSVG PRHRLNQQFH GFDNNNFNSG  360
YNNKRRFEGE SLHPGTNLTC ENSPCPYSRP EMGFNDRVLR ENHQMTCPYK QPTPFYQPAE  420
PFGMPYPDYN RSFYGNRPES QVGMQQQQQQ VQSIPDYFTQ SNNLYRPKAA ERGGNTSVMN  480
HNTNNGYAQT VGMENYHQNQ DQDLSMPWIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-471753032127Protein ETHYLENE INSENSITIVE 3
4zds_B4e-471753032127Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120725.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895830.0AC189583.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120725.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 2 protein
SwissprotO231150.0EIL2_ARATH; ETHYLENE INSENSITIVE 3-like 2 protein
TrEMBLM4CDS70.0M4CDS7_BRARP; Uncharacterized protein
STRINGBra002358.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147191621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21120.10.0ETHYLENE-INSENSITIVE3-like 2