PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009117994.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 419aa MW: 48123 Da PI: 7.9113 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 85.7 | 5.5e-27 | 74 | 155 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++ +s +++y++++e XP_009117994.1 74 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGN---RSAKMSYYKEIE 155 ********************************************************************95...566899***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-4 | 64 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.979 | 66 | 130 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0096 | 70 | 132 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 9.80E-30 | 72 | 137 | No hit | No description |
Pfam | PF13837 | 4.0E-20 | 73 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MFVSDKPRPI DFYKDDNTTT ARDNMIIDVT TNAPGRDLHP HHHHHHLQPQ QILLGESSGE 60 DHEVKAPKKR AETWVQDETR SLIMFRRGMD GLFNTSKSNK HLWEQISAKM REKGFDRSPT 120 MCTDKWRNLL KEFKKAKHHD RGNRSAKMSY YKEIEEILRE RSKKVTATGQ YSKSSNATPT 180 AKVDSFMQFT DKGFDDPSIS FGSVEANGRP ALNLERRLDH DGHPLAIATV DAVAANGVPP 240 WNWRETPGNG GDSHGQPFGG RVITVKFGDY TRRIGVDGST EAIKDTIRSA FGLRTRRAFW 300 LEDEDQVVRC LDRDMPLGNY LLHVDDGKIH HIPICFYTQI RLPSCQYPKL NCTGLAIRVC 360 HYDESNQLPV HTEEKVFYTE EDYRDFLARR GWTCLQFDGF RNIENMDDLQ PGAVYRGVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 4e-54 | 68 | 153 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.12958 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009117994.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009117994.1 | 0.0 | PREDICTED: trihelix transcription factor GT-1-like isoform X1 | ||||
Swissprot | Q9FX53 | 0.0 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A3P5YKC6 | 0.0 | A0A3P5YKC6_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EDP3 | 0.0 | M4EDP3_BRARP; Uncharacterized protein | ||||
STRING | Bra026903.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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