PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117985.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 195aa    MW: 22658.7 Da    PI: 5.3546
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1414.3e-1385135555
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                     +++rr+ +NRe+ArrsR RK+  ++eL   v  L + N+ L+++l++ ++ 
  XP_009117985.1  85 RKQRRMVSNRESARRSRMRKQRHLDELWSQVIRLRTDNHCLIDKLNNVSES 135
                     79****************************************999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-1281145IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.03683135IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.0E-1085158No hitNo description
PfamPF001704.4E-1185137IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-1285134No hitNo description
CDDcd147022.30E-1786136No hitNo description
PROSITE patternPS00036088103IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MNTVPAELTG YFQYVAPGKY NNQTPIMESE YFNMHSSPTS SSYYINGLIN NNNFYSSSSN  60
GQDLMTSNNS ASDEDHQQSM AIDERKQRRM VSNRESARRS RMRKQRHLDE LWSQVIRLRT  120
DNHCLIDKLN NVSESHELAL KENAKLKEET SDLRQLLSEI KSNNEDDNNF LRDLEDSISN  180
TRSGSDQRGR DFELY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197104RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0271340.0AC027134.4 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete sequence.
GenBankAF3324300.0AF332430.1 Arabidopsis thaliana clone C00105 (e) putative bZIP transcription factor (At1g13600) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF21F230.0AC027656.4 Sequence of BAC F21F23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117984.11e-142PREDICTED: basic leucine zipper 43-like
RefseqXP_009117985.11e-142PREDICTED: basic leucine zipper 43-like
RefseqXP_013731084.11e-142basic leucine zipper 43-like
SwissprotQ9FMC25e-35BZP43_ARATH; Basic leucine zipper 43
TrEMBLM4EDN51e-141M4EDN5_BRARP; Uncharacterized protein
STRINGBra026895.1-P1e-142(Brassica rapa)
STRINGBra026896.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.11e-115basic leucine-zipper 58
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]