PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009111738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 221aa MW: 25369.8 Da PI: 4.3719 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.5e-05 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k+Fs + +L H++ H XP_009111738.1 82 FTCRFCNKRFSASQSLGGHMNAH 104 89******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.3E-6 | 78 | 107 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.15E-7 | 79 | 109 | No hit | No description |
PROSITE profile | PS50157 | 10.741 | 82 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MENQVMSSGS SSVVQPEKCN DINVAVEESR EKATENNNSG LGSDPQEVMS ERRIENPSRG 60 YSAVRTENGI MQHYTSETNK IFTCRFCNKR FSASQSLGGH MNAHKRELQW ERKRKEMEQM 120 EQEFHFQWML SQYSQGGLEP MPSYNNYPPM LPRNVPPFPP HRTTNLPSYW YPQENVLNEE 180 DVILKLGNDN IVEIDDDDDD DDAVDQPEEG TSKSWGADLS L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009111738.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009111738.1 | 1e-166 | PREDICTED: zinc finger protein JAGGED-like | ||||
TrEMBL | A0A078G2U1 | 1e-136 | A0A078G2U1_BRANA; BnaA09g03920D protein | ||||
STRING | Bo9g010580.1 | 1e-134 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6363 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27880.1 | 9e-49 | C2H2 family protein |