PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111420.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 367aa    MW: 39608.6 Da    PI: 6.7327
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.46.5e-23249311163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     eke+kre+rkq+NRe+ArrsR+RK+ae+eeL  kv++L aeN++L+++l +l++e++kl+ e+
  XP_009111420.1 249 EKEVKREKRKQSNRESARRSRLRKQAETEELSVKVDALVAENMTLRSKLGQLNDESEKLRLEN 311
                     89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-25198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.8E-13133208No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-16245308No hitNo description
PfamPF001701.0E-21249311IPR004827Basic-leucine zipper domain
SMARTSM003388.5E-20249313IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.76251314IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-10252308No hitNo description
CDDcd147021.72E-20254303No hitNo description
PROSITE patternPS000360256271IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGSNEEGKTT QSDKPAQVQA PPPPPEQSNV HVYHHDWAAM QAYYGPRVAI TPQYYNSNGH  60
APPPPPYIWG SPSPMMAPYG TPYPPFCPPG GVYAHPALQM GSQPQGPASQ ATPVVATPLN  120
LEAHPANSSG NTDQGFMKKL KEFDGLAMSI SNNKSGSGEH SSEPKNSQSS ENDDSSNGSD  180
GNTTGGEQSR KKRSREGSPN NDGKPSSQIV PLLRDESEKQ AVTMGTPVMP TVLDFPQPFP  240
GAPHEVWNEK EVKREKRKQS NRESARRSRL RKQAETEELS VKVDALVAEN MTLRSKLGQL  300
NDESEKLRLE NQALLDQLKA QATGKTENLI SGVDKNNSSV SGTSSSSKNA EQQLLNVSLR  360
TDSVAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265271RRSRLRK
2265272RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.221210.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves. {ECO:0000269|PubMed:1373374}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX839200.0X83920.1 B.napus mRNA for G-Box binding factor 2A.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111420.10.0PREDICTED: G-box-binding factor 2 isoform X1
SwissprotP427751e-168GBF2_ARATH; G-box-binding factor 2
TrEMBLM4F8H00.0M4F8H0_BRARP; Uncharacterized protein
STRINGBra037382.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.11e-130G-box binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li B, et al.
    Promoter-based integration in plant defense regulation.
    Plant Physiol., 2014. 166(4): p. 1803-20
    [PMID:25352272]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]