PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110308.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 317aa    MW: 35004.6 Da    PI: 4.9623
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.5e-1165105345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++T+eE++l+++ ++ +G++ W +Ia++++ g+t++++k  w+
   XP_009110308.1  65 SFTPEEEDLIIKMHAAMGSR-WPLIAQHLP-GKTEEEVKMVWN 105
                      79******************.*********.********8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.32E-1244116IPR009057Homeodomain-like
PROSITE profilePS5129414.19358112IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-1662112IPR009057Homeodomain-like
SMARTSM007171.3E-1062110IPR001005SANT/Myb domain
PfamPF002494.3E-1065106IPR001005SANT/Myb domain
CDDcd001671.96E-865108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVRSCSSKSK NPWTDEDNTS QKFAFASASA SSKNGSTPKK IGLRRCGKSC RVRKTDNAGA  60
AKHESFTPEE EDLIIKMHAA MGSRWPLIAQ HLPGKTEEEV KMVWNSKLKK KLSQMGIDHV  120
THRPFSHVLA EYGNINGGGG GNLNPNPMNQ TGSLGPNPSL NEDSHQQQQQ QSNDSGDLMF  180
HLQAIKLMTE SSNQVKPDST FMYASSSSSN SSPPLFSSTC STIAQENSEV NFTWSDFLLD  240
QETFNENQQN FPDQELDNLF GNEFSEAEAV ATMANTSAPD AQMEEESLSN GFVESIIAKE  300
KELFLGFPSY LDQPFHF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00148DAPTransfer from AT1G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110308.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110308.10.0PREDICTED: transcription factor MYB35
TrEMBLA0A0D3DQA70.0A0A0D3DQA7_BRAOL; Uncharacterized protein
STRINGBo8g068210.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18960.11e-154MYB_related family protein