PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110159.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 319aa    MW: 36160 Da    PI: 6.6942
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110159.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.51e-12981651983
                     -HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3  19 pkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     p + +e +    +++++s  l+l d + ++W++kl ++   g+y+ ++ W +Fv+a++L++gD+vvF 
  XP_009110159.1  98 PPNLTEMCfpaALVPPRSDILRLSDVERKEWQMKLVFDVETGEYTVGEEWASFVRAKDLRAGDTVVFV 165
                     55555555677778889999***********************************************7 PP
2Auxin_resp29.43.5e-11204277781
      Auxin_resp   7 tksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrs 81 
                     ++++ e +Y+P   +s+F v+ + ++++l v ++ GmR+k   e +d ++  + + t  g sd++     +S Wr+
  XP_009110159.1 204 QSKPVELTYSPMDPHSDFLVSPRVYRDSLLVVWMRGMRVKKVREYDDDHHVGTiTSTTFGNSDVHG--VMRSLWRC 277
                     6678899*************************************9998887665777777777555..789***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.22E-1082164No hitNo description
PROSITE profilePS5086310.0189181IPR003340B3 DNA binding domain
PfamPF023624.0E-1094165IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-12102183IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-10111170IPR015300DNA-binding pseudobarrel domain
PfamPF065074.1E-6204277IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSRKPSDFEM VTGSPALGSA YYIPQGHAQY CNTSEDTVSV CRYMPPYLCN VAYKNCFGDN  60
TTDELFTTVC LSPCTTHQNN FTDHSPHGFF RLSKLLEPPN LTEMCFPAAL VPPRSDILRL  120
SDVERKEWQM KLVFDVETGE YTVGEEWASF VRAKDLRAGD TVVFVSVLGS AITLFATSRA  180
HSQSKVRHSI NLDAFSKAIG GLMQSKPVEL TYSPMDPHSD FLVSPRVYRD SLLVVWMRGM  240
RVKKVREYDD DHHVGTITST TFGNSDVHGV MRSLWRCHTV VWDAPYGFDR IHFSPWELTP  300
SQEQPQPQPQ PPRTLHLFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-132130042354Auxin response factor 1
4ldw_A1e-132130042354Auxin response factor 1
4ldw_B1e-132130042354Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110159.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892710.0AC189271.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110159.10.0PREDICTED: auxin response factor 9-like
TrEMBLM4DIR80.0M4DIR8_BRARP; Auxin response factor
STRINGBra016395.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2555833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.23e-17auxin response factor 9