PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009108824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 832aa MW: 91953.2 Da PI: 6.2354 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9.2e-19 | 15 | 73 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_009108824.1 15 KYVRYTPEQVEALERLYNDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73 5679*****************************************************97 PP | |||||||
2 | START | 193.3 | 1.2e-60 | 159 | 367 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +a e+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d+++W +++++ ++++v+s++ g+l+l+ XP_009108824.1 159 IADETLTEFISKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGIAARACGLVGLDPT-RVAEILKDRPCWLRDCRSLDIVNVLSTAngGTLELI 252 68899*****************************************************.8888888888*****************999****** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++++a+++l+p Rdf+++Ry+ +++g++vi+++S++++q+ p+ s+++vRae lpSg+li+p+++g+s +++v+h+dl+ ++++++lrsl+ XP_009108824.1 253 YMQMYAPTTLAPaRDFWMLRYTSVMEDGSLVICERSLNNTQNGPSmppSPHFVRAEILPSGYLIRPCEGGGSILHIVDHFDLEPWSVPEVLRSLY 347 *******************************************99999*********************************************** PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s++ +++t++a+l+++++ XP_009108824.1 348 ESSTLLAQRTTMAALRYLRQ 367 ***************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.499 | 10 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-15 | 12 | 78 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.71E-16 | 15 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.19E-16 | 15 | 75 | No hit | No description |
Pfam | PF00046 | 2.7E-16 | 16 | 73 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-18 | 17 | 73 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.13E-6 | 67 | 106 | No hit | No description |
PROSITE profile | PS50848 | 26.809 | 149 | 377 | IPR002913 | START domain |
CDD | cd08875 | 1.02E-81 | 153 | 368 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.3E-24 | 157 | 363 | IPR023393 | START-like domain |
SMART | SM00234 | 9.4E-43 | 158 | 368 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.12E-38 | 158 | 369 | No hit | No description |
Pfam | PF01852 | 2.2E-58 | 159 | 367 | IPR002913 | START domain |
Pfam | PF08670 | 8.3E-48 | 691 | 831 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 832 aa Download sequence Send to blast |
MGGGSNNSHN IDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIRECP ILSNIEPKQI 60 KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR LQKQVSHLVY ENSYFRQHPQ 120 NGNLATTDTS CESVVTSGQH HLTPQHQPRD ASPAGLLSIA DETLTEFISK ATGTAVEWVQ 180 MPGMKPGPDS IGIVAISHGC TGIAARACGL VGLDPTRVAE ILKDRPCWLR DCRSLDIVNV 240 LSTANGGTLE LIYMQMYAPT TLAPARDFWM LRYTSVMEDG SLVICERSLN NTQNGPSMPP 300 SPHFVRAEIL PSGYLIRPCE GGGSILHIVD HFDLEPWSVP EVLRSLYESS TLLAQRTTMA 360 ALRYLRQISQ EISQPNVSGW GRRPAALRAL SQRLSKGFNE AVNGFSDEGW SMLESDGIDD 420 VTLLVNSSPT KMMMTSSLPF SNGFTSMPSA VLCAKASMLL QNVPPSILLR FLREHRQEWA 480 DNSIDAYSAA AIKAGPCSLP IHRPGSFGGQ VILPLAHTIE NEEFMEVIKL ESLGHYQEDM 540 MMPADVFLLQ MCSGVDENAV ESCAELIFAP IDASFSDDAP IIPSGFRIIP LDTKSEGVSP 600 NRTLDLASAL DVGSRTAGDS CGSRGNTKSV MTIAFQLAFE MHMQENVASM ARQYVRSVIA 660 SVQRVALALS PSSHQLSGGL RPPPASPEAH TLARWISHSY RCYLGVELLK PDGTDLLKSL 720 WHHPDALMCC SLKALPPVFT FANQAGLDML ETTLVALQDI TLDKIFDNNN KKTLCSDFPQ 780 IMQQGFMCID GGICMSSMGR AVTYEKAVAW KVLNDNEDPH CICFMFLNWS FI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.1480 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009108824.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441292 | 0.0 | AJ441292.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 8 (hb-8 gene). | |||
GenBank | AY099631 | 0.0 | AY099631.1 Arabidopsis thaliana HD-zip transcription factor (athb-8) (At4g32880) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009108824.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-8-like | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | M4F0E5 | 0.0 | M4F0E5_BRARP; Uncharacterized protein | ||||
STRING | Bra034539.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2022 | 26 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |