PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009107057.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 126aa MW: 14504.7 Da PI: 9.735 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.4 | 6.2e-14 | 8 | 104 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +kvlt sd + +g+l+lpk+ +e++ +++++++++ d + +s+ v+l +k++++y +++GWk+ ++ gLk+gD++ ++ + +++ XP_009107057.1 8 EKVLTDSDLSVNGWLILPKNKMENIeknmgfP-MPRNGVQVKILD-NDKSYWVNL--NKHKSTYHIGSGWKKIRDDRGLKTGDIIQLY--W-KST 95 799*******************9888888752.345888999999.557777***..*******************************..5.444 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +++++++++ XP_009107057.1 96 KFLFSMCSS 104 558888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-15 | 2 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-16 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-12 | 6 | 102 | No hit | No description |
PROSITE profile | PS50863 | 9.192 | 7 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.4E-12 | 7 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-11 | 8 | 104 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MDPNMMIEKV LTDSDLSVNG WLILPKNKME NIEKNMGFPM PRNGVQVKIL DNDKSYWVNL 60 NKHKSTYHIG SGWKKIRDDR GLKTGDIIQL YWKSTKFLFS MCSSPKEEQA CQKGESSSSN 120 KTMGER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009107057.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489546.1 | 1e-64 | PREDICTED: B3 domain-containing protein At1g08985-like | ||||
Swissprot | Q8GWU1 | 1e-38 | Y1898_ARATH; B3 domain-containing protein At1g08985 | ||||
TrEMBL | A0A397ZAE9 | 7e-68 | A0A397ZAE9_BRACM; Uncharacterized protein | ||||
STRING | Bo3g092070.1 | 6e-61 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14170 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 4e-41 | B3 family protein |