PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105312.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 512aa    MW: 57576.1 Da    PI: 5.1036
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105312.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.74.1e-26193247155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_009105312.1 193 KARVVWSFELHQKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 247
                     68****************************************************8 PP
2Response_reg79.98.5e-27121181107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ G
  XP_009105312.1  12 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETKRVMKGVQHG 104
                     89*********************.***************999999**********************5543.7********************** PP

                     ESEEEESS--HHHH CS
    Response_reg  94 akdflsKpfdpeel 107
                     a d+l Kp+ ++el
  XP_009105312.1 105 ACDYLLKPIRMKEL 118
                     *********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.6E-439133No hitNo description
SuperFamilySSF521722.13E-359131IPR011006CheY-like superfamily
SMARTSM004481.6E-3110122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.63111126IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.1E-2412119IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.96E-3113126No hitNo description
Gene3DG3DSA:1.10.10.608.0E-28190252IPR009057Homeodomain-like
SuperFamilySSF466893.4E-16191251IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-22193247IPR006447Myb domain, plants
PfamPF002492.0E-7195246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MDKGFSPVGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCG LAREALRLLR ERKDGYDIVI  60
SDVNMPDMDG FKLLEHVGLE LDLPVIMMSV DGETKRVMKG VQHGACDYLL KPIRMKELKI  120
IWQHVLRKKL QEVRDIEGCY EGGADWFTRN DEAHLLGGGG EDVSFGRKRK EFDFEKKLLL  180
QDESDPSSSS SKKARVVWSF ELHQKFVNAV NQIGCDHKAG PKKILDLMNV PWLTRENVAS  240
HLQKYRLYLS RLEKGKELKC YSGGVKNMDS PPKDSEFNTG HQSPGKNSYA FSGGSSDPKQ  300
LASSSVSDPS SDVHMPPKAK KTRVEFDPPI SSSSAFESLL PWSDVPDPLE SKPQILYGSS  360
FLQQQPLPSQ SPYVANSAPT LMEQEMKPSY ETSVNADEFL MPQDKNSTVI LQDLDLSAPS  420
AISSINVTND TESILRSLSW ELPESHHSGF IDTDLDFSWL QNEHFLANTS GNFQFQDYSC  480
SPSLLSELPP HLWFGNEPDE YTLMVDHGLF IS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17189252163ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and stems. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105312.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324490.0AC232449.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105312.10.0PREDICTED: two-component response regulator ARR11
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLM4CJ610.0M4CJ61_BRARP; Two-component response regulator
STRINGBra004245.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]