PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009105020.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 353aa MW: 39208.8 Da PI: 6.2647

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009105020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.7	4.9e-14	164	210	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L XP_009105020.1 164 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 210 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.85	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-11	164	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-14	165	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-14	165	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.69E-5	174	213	No hit	No description
CDD	cd04873	2.16E-7	250	318	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MCSKKEVESS GAMNNIQNHP NNLFFHQLVS HHHHQEPSQS ETFRAPGYNV ESGFTIFSQD 60 SVSPIWPTST QPQFDPFTPP TPQASFYGSF FNRSQAHHQG LQFGYEGFGG GTSATHHHQE 120 QLRILAEALG PVVQAGSGPF GLQGELGKMT AQEIMDAKAL AASKSHSEAE RRRRERINNH 180 LAKLRSILPN TTKTDKASLL AEVIQHVKEL KRETSVISET NLVPTESDEL TVAFTEEEET 240 EDGRLVIKAS LCCEDRSDLL PDMIKTLKSM RLKTLKAEIT TAGGRVKNVL FVTGEESSGE 300 DMEDYCIGMI EEALKAVMGK CNVEESSSSV NAKRQRMSSH NTITIIEQQQ YHH

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MCSKKEVESS GAMNNIQNHP NNLFFHQLVS HHHHQEPSQS ETFRAPGYNV ESGFTIFSQD  60
SVSPIWPTST QPQFDPFTPP TPQASFYGSF FNRSQAHHQG LQFGYEGFGG GTSATHHHQE  120
QLRILAEALG PVVQAGSGPF GLQGELGKMT AQEIMDAKAL AASKSHSEAE RRRRERINNH  180
LAKLRSILPN TTKTDKASLL AEVIQHVKEL KRETSVISET NLVPTESDEL TVAFTEEEET  240
EDGRLVIKAS LCCEDRSDLL PDMIKTLKSM RLKTLKAEIT TAGGRVKNVL FVTGEESSGE  300
DMEDYCIGMI EEALKAVMGK CNVEESSSSV NAKRQRMSSH NTITIIEQQQ YHH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	174	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009105020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189291	0.0	AC189291.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026C23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105020.1	0.0	PREDICTED: transcription factor bHLH30-like
Refseq	XP_013652234.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	0.0	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A078F323	0.0	A0A078F323_BRANA; BnaA07g24430D protein
TrEMBL	A0A397YYV2	0.0	A0A397YYV2_BRACM; Uncharacterized protein
TrEMBL	M4CII1	0.0	M4CII1_BRARP; Uncharacterized protein
STRING	Bra004015.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7048	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-171	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]