PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101911.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 182aa    MW: 19973.4 Da    PI: 6.3772
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.5e-07433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++ fC  ++  lC+ C ++ H
  XP_009101911.1  4 LCDACENAAAIVFCAADEAALCRACDEKVH 33
                    6*******9******************998 PP
2zf-B_box26.71.1e-085291237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                    ++++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  XP_009101911.1 52 NAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91
                    789***************************9996555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.338147IPR000315B-box-type zinc finger
CDDcd000211.30E-6345No hitNo description
SMARTSM003364.6E-7447IPR000315B-box-type zinc finger
PfamPF006436.4E-6442IPR000315B-box-type zinc finger
SMARTSM003362.2E-125196IPR000315B-box-type zinc finger
PROSITE profilePS501198.9165196IPR000315B-box-type zinc finger
PfamPF006431.7E-65291IPR000315B-box-type zinc finger
CDDcd000211.74E-75696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MRILCDACEN AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR IEFPGDKPKP PNNTRANLQN  120
QRVSSNANGE ANGKTTDDEM IDLNSNPQRL HEPSSNNHGI DVNNTSNHET PGVVPFKREP  180
DK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.165250.0bud
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101911.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528901e-152AK352890.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-L04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101911.11e-133PREDICTED: B-box zinc finger protein 19-like isoform X3
RefseqXP_013644917.11e-133B-box zinc finger protein 19-like isoform X3
SwissprotC0SVM51e-114BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A397Z5441e-132A0A397Z544_BRACM; Uncharacterized protein
TrEMBLM4EXQ11e-132M4EXQ1_BRARP; Uncharacterized protein
STRINGBra033588.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-116DBB family protein