PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008246329.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 729aa MW: 78444.9 Da PI: 5.9004 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.7 | 3.3e-16 | 461 | 507 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq XP_008246329.1 461 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 507 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.58E-17 | 453 | 511 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.1E-19 | 454 | 511 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.28E-19 | 454 | 516 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.349 | 457 | 506 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-13 | 461 | 507 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-17 | 463 | 512 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 729 aa Download sequence Send to blast |
MPLSELYRMA GRVDSSQDFE PVNDFVELVW ENGQIMMQGQ SSRTRKSPTC NNSLPSYTPK 60 NRDKDVGNGN IAKTGKFGSV ESVLDEIPLS VPSSEMGLSE DDEILPWLNY SIDEPLHHEY 120 CHEFLPELST VTANEISSNS NLASVDKRSS SSQVYRDSNT NSAHEGAYLE QRNAPKVTSV 180 DGDDVSRPKT GTSQLYPLSS QQSQSLFPSF RSRVSDIVGD NTGSATHPTV CKNSTEVSSA 240 GVFPGIKMQR QDPVMPSNNN SSVVNFSHFS RPAALVKSNL QSIGVVAGSG LSSMERIGNK 300 GKVSAATSNK PPESTLIDSS SGLPKESNSQ CQHITVTSNV ELKPTEAKPL EESCAAKQSE 360 AACQEDASKN DTNTNHIPCE SANRVLRDGE KTLEPVVASS VCSGNSVERA SDDPTHALKR 420 KSRDTDESEC HSDDVEEESV GVKKIAHARG MGSKRSRAAE VHNLSERRRR DRINEKMRAL 480 QELIPNCNKV DKASMLDEAI EYLKTLQLQV QVNLFYHSLV YSSFMLMSKK LDIQLVXXXX 540 XXGMGMGMGM GMGLGMGFGM GMPDMNGGSP SYPMLQVPPM QGAHFPNSPM AGHPAFNGMV 600 GSNLQMFGLP GQGVPMPMQR PPLVPSSGGP FMKSSVGLNA CGAGGPMENA ESAPVSGSKD 660 SVQNMNSQVV QNTNANSSMN QTSSQCQATN EGFGQPALVR KNVQAADVDN NRANRSSNGN 720 DVVLSRTAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 465 | 470 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008246329.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689402 | 0.0 | KP689402.1 Prunus pseudocerasus isolate CL7313.1 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008246329.1 | 0.0 | PREDICTED: transcription factor PIF3 | ||||
TrEMBL | A0A0U2RX57 | 0.0 | A0A0U2RX57_9ROSA; BHLH transcription factor | ||||
STRING | XP_008246329.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 6e-46 | phytochrome interacting factor 3 |