PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008245457.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23834 Da PI: 8.9982 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45 | 1.4e-14 | 18 | 63 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +ie + v+fskRr gi KKA+ + +LC+ eva++ifs++gk + XP_008245457.1 18 KIEKEDDLLVSFSKRRSGISKKASDMITLCGGEVAIVIFSPSGKPF 63 677777778**********************************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.46 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.6E-20 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.07E-23 | 10 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-15 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.6E-18 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-15 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-15 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MASEGKKTRG RQRIEMKKIE KEDDLLVSFS KRRSGISKKA SDMITLCGGE VAIVIFSPSG 60 KPFSFGHPSV DAVINRFLNQ NQLENNEYTH QIMEVHQKMR IADLIQLFNE LLIQLEALKE 120 RRKLLEKISK TRGNNQEFWW NASLDELDVN ELKQTYASMA ELHMTITNHL KERRNAFDAS 180 SSSAQQTNPN FDTNPSGLGS YAFPPSYGH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008245457.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008245457.1 | 1e-156 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | M5WQA4 | 1e-146 | M5WQA4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008245457.1 | 1e-156 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-36 | AGAMOUS-like 62 |