PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008245246.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 36864.5 Da PI: 8.2368 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.3e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed++l+ +v+++G g+W + +++ g+ R++k+c++rw++yl XP_008245246.1 15 KGPWTLAEDQKLLAYVQKHGHGNWQSLPQKAGLQRCGKSCRLRWRNYL 62 79*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.6e-15 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +Ed +++++++lG++ W++I ++++ +Rt++++k++w+++l XP_008245246.1 68 RGNFSLQEDRTIIQLHALLGNK-WSAITAHLP-KRTDNEVKNYWHSHL 113 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.246 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.7E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.26E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.091 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-24 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-14 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.03E-10 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGKSTHCVAS SGMKKGPWTL AEDQKLLAYV QKHGHGNWQS LPQKAGLQRC GKSCRLRWRN 60 YLRPDIRRGN FSLQEDRTII QLHALLGNKW SAITAHLPKR TDNEVKNYWH SHLKKRLALK 120 GYDPVTHKPK TTIFGSANGS TDDPKTSTNL NHIAQWESAR LQAEARFGRD LELHKQAHHL 180 YNNNDISATS TILLDHSKDF GPTDQLYGQN TPQCLDILRA WESILMSNYS EAAGGQDHVN 240 SFGNGLAGDF EPPIISAISS SNGSSLMDCF FHEPIRQCFD ENYGTSITEP FTAVPHNMGF 300 KNGACLEDFG LWEIIMQGRK DCPISGISM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008245246.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008245246.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | Q9LE63 | 3e-81 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A0A314ZM78 | 0.0 | A0A314ZM78_PRUYE; Transcription factor MYB32-like | ||||
STRING | XP_008245246.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19037 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 3e-82 | myb domain protein 106 |