PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242216.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRF
Protein Properties Length: 381aa    MW: 43085.6 Da    PI: 8.6477
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242216.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.5e-2479122144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e
  XP_008242216.1  79 DPEPGRCRRTDGKKWRCSKEAFADSKYCERHMHRGKNRSRKPVE 122
                     79***************************************987 PP
2QLQ57.83.3e-20843237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +FT++Q+q+L++Q+l+yKy++++  +Pp+Ll+ i++
  XP_008242216.1  8 PFTPSQWQELEHQALIYKYMVSGISIPPDLLFSIKR 43
                    8*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.1E-12743IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.446843IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-14841IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.48979123IPR014977WRC domain
PfamPF088791.3E-2080122IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MSGRTRFPFT PSQWQELEHQ ALIYKYMVSG ISIPPDLLFS IKRSCLDSPL PSKLFSHPPH  60
SKPTIGWSCF QMGLGRKVDP EPGRCRRTDG KKWRCSKEAF ADSKYCERHM HRGKNRSRKP  120
VEVFKTPITT NSNPSSPTPT TISSITSKNN PPSTSTPTFH SLSSSLSSLS SESHHTQLNH  180
SSYNTNLDHH PFLYHHTSSS RPPGFGLSHQ ERNTSLLLDS GSYPQASSEY RNRYVYGLKE  240
EVDEHAFFSE PSGSVRDFSG SSSMDDSWQF TPLTMSTCTS SSSKQRSCSA LQSEHSHLQL  300
QSNITPKQQN YYALGSDMKM DRNEGTQKTI HRFFDEWPLK DKDSWLDLDD KSSNSGSVSN  360
TRLSISTHDF PVFSSRNHND D
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242216.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-48AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
GenBankLN6818061e-48LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132561e-48LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242216.10.0PREDICTED: growth-regulating factor 1 isoform X1
TrEMBLA0A251NH050.0A0A251NH05_PRUPE; Uncharacterized protein
STRINGXP_008242216.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-55growth-regulating factor 5