PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008241588.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bZIP

Protein Properties

Length: 443aa MW: 47438.3 Da PI: 6.4587

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008241588.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.4e-10	244	292	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + XP_008241588.1 244 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQ 292 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-15	240	304	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.829	242	305	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.9E-10	244	298	No hit	No description
SuperFamily	SSF57959	9.14E-11	244	295	No hit	No description
Pfam	PF00170	1.6E-8	244	292	IPR004827	Basic-leucine zipper domain
CDD	cd14703	4.84E-23	245	294	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MSTETRPMQD PQHQSNPNPK FISINNASSN NPNPKSNPIP LPRSIGISNN ANASGVVATS 60 SSSSSLTSLS LTMLGNSNAP RPFIREEAAA AAAAAAAAEG GPHHHNSHRR AHSEVSFRLP 120 EDMMDLSAPD QSKGGSSTAS LEEMGSEEDL FSTYIDLDKL GGCNCSDQSG GGNNGPSGGP 180 DDGSGGPNVN DGGGEGEEKR SSRHRHSCSV DGSSTSTGVF GEVMEAKKAM PPDKLAELWN 240 LDPKRAKRIL ANRQSAARSK ERKARYIQEL ERKVQTLQTE ATTLSAQLTL FQRDTTGLST 300 ENTELKLRLQ AMEQQAQLRD ALNEALKKEV ERLKIATGEM MSPSDSFNLG MHQMPYNHPS 360 AYFPLQQQPG PAGHQNMQMP QFNHSQSNMP THHLQQSNSH TFSDIMQNGP VGQLQGLDIG 420 TKGAPLVKSE GPSLSASESS TTF

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MSTETRPMQD PQHQSNPNPK FISINNASSN NPNPKSNPIP LPRSIGISNN ANASGVVATS  60
SSSSSLTSLS LTMLGNSNAP RPFIREEAAA AAAAAAAAEG GPHHHNSHRR AHSEVSFRLP  120
EDMMDLSAPD QSKGGSSTAS LEEMGSEEDL FSTYIDLDKL GGCNCSDQSG GGNNGPSGGP  180
DDGSGGPNVN DGGGEGEEKR SSRHRHSCSV DGSSTSTGVF GEVMEAKKAM PPDKLAELWN  240
LDPKRAKRIL ANRQSAARSK ERKARYIQEL ERKVQTLQTE ATTLSAQLTL FQRDTTGLST  300
ENTELKLRLQ AMEQQAQLRD ALNEALKKEV ERLKIATGEM MSPSDSFNLG MHQMPYNHPS  360
AYFPLQQQPG PAGHQNMQMP QFNHSQSNMP THHLQQSNSH TFSDIMQNGP VGQLQGLDIG  420
TKGAPLVKSE GPSLSASESS TTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008241588.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008241588.1	0.0	PREDICTED: transcription factor RF2b
Swissprot	Q6S4P4	1e-100	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A314US41	0.0	A0A314US41_PRUYE; Transcription factor RF2b
STRING	XP_008241588.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	3e-94	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]