PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241327.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 483aa    MW: 54798.8 Da    PI: 6.3651
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241327.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.31e-2399199186
        trihelix   1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                     +Wt+ +v++Li a+ +++++ +++               +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++  
  XP_008241327.1  99 KWTDTMVRLLIMAVFYIGDEGGSEGtdptgkkksvggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQG 193
                     7**************999999965346677788999999**********************************************5599999999 PP

        trihelix  81 yfdqle 86 
                     ++++++
  XP_008241327.1 194 LLEKMD 199
                     999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-2197224No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MESNGLFSGI LGLEMPLHQT QNPQNPQNPH HMHQPQMVAY AHHDPDHPQH PHQSVKQGYP  60
FATKSKQIAL SDDDEPGFGA DDNSNGDNKR KISPWQRMKW TDTMVRLLIM AVFYIGDEGG  120
SEGTDPTGKK KSVGGLLQKK GKWKSVSRAM MEKGFYVSPQ QCEDKFNDLN KRYKRVNDIL  180
GKGTACRVVE NQGLLEKMDL SPKMKEEVRK LLNSKHLFFR EMCAYHNSCG HGTVGGVSNG  240
AHNSPPEGAT EPSEITAHQQ QPQQQRCFHA SENAHVVANS GRSETEASKM AKGGSGGEDE  300
DEDYEDDDSE DEDEEEEEVV EVGPGSRGLM GHGHHEDDDD NDDRASLKRP RKEGCFSGPS  360
SSQLTHQLGC EVRGVLQDVS KSPWEKKQWL KTRLIQLEEQ QVNFQYQAFE LEKQRLKWIK  420
FSGKKERDME RAKLENERRR LENERMLLLV RKKELELLEL HHQQQQQQQN SSNKRGDPSS  480
LTG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241327.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241327.10.0PREDICTED: uncharacterized protein LOC103339760
TrEMBLA0A251NAH10.0A0A251NAH1_PRUPE; Uncharacterized protein
STRINGXP_008241327.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-77sequence-specific DNA binding transcription factors