PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241303.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 293aa    MW: 31852.9 Da    PI: 4.789
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241303.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-05266289123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     + C+ C++sF++   L++H +  H
  XP_008241303.1 266 FNCQSCNRSFNSDVALQSHTKAkH 289
                     78*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.04E-5260288No hitNo description
PROSITE profilePS5015711.946266293IPR007087Zinc finger, C2H2
PROSITE patternPS000280268289IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEFWGVEVKS GQSVSVEPKN KVVHLSQVCL DDVKKAKGSN PISLFVKTGN HKLVLGILSA  60
EKFPQLPLDI FFGEKFELSH NWKNGSVHFI GYKSLSNTGD NSDSEEDVAL TVVDNGKPVI  120
SGKPKLSTED TKKAIKSEQK EASSDDDESD DEEVGADQTK VKFEEGSSED EDESDDDDAD  180
SEDETDDSEE EDEETPKKAD VSKKRPAESA KILANNKKAK FVTPEKTDSK KGSVHIATPY  240
PAKLAGKKPA TSDQSKQQAP KSGGTFNCQS CNRSFNSDVA LQSHTKAKHS AAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241303.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241303.10.0PREDICTED: histone deacetylase HDT1 isoform X1
TrEMBLM5W9V81e-164M5W9V8_PRUPE; Uncharacterized protein
STRINGXP_008241303.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.23e-28histone deacetylase 3