PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008241202.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 215aa MW: 23532.6 Da PI: 9.3034 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.7 | 6.4e-18 | 24 | 68 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+i+n+s qvtfskRr+g++ KA+ L LC+aeva+++fs++g+ XP_008241202.1 24 KKIQNTSSLQVTFSKRRTGLFRKASQLGALCGAEVAILVFSPHGR 68 689***************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.6E-27 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-24 | 16 | 91 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.404 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-18 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.7E-22 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-18 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-18 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSDDSSSTVT KQRSTMGRKR IDIKKIQNTS SLQVTFSKRR TGLFRKASQL GALCGAEVAI 60 LVFSPHGRPF VFGHPSVDSA ISRLAGTSTS AECMHASGDD EETHSSIVQS NLAHSGTTYE 120 TSPDKEGLCL RLRVGGGGSM GLVKEETQEV AEAWSGGRGF WWDQPTEKMK LHELKQFKTS 180 LEDLRTKVGM QLDEMARRKL AARDFLGVYR NGSCG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 1e-13 | 1 | 100 | 1 | 100 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 1e-13 | 1 | 100 | 1 | 100 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008241202.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241202.1 | 1e-159 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A314Y443 | 1e-140 | A0A314Y443_PRUYE; Agamous-like MADS-box protein AGL62 | ||||
STRING | XP_008241202.1 | 1e-158 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-34 | AGAMOUS-like 62 |