PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239931.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 398aa    MW: 43649.4 Da    PI: 4.8953
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239931.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-175297147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c++rw + 
   XP_008239931.1 52 KGPWSPEEDAILSRLVSKFGARNWSLIARGID-GRSGKSCRLRWCNQ 97
                     79******************************.***********985 PP
2Myb_DNA-binding56.18.7e-18104148147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd+ ++ a++ +G++ W++Iar ++ gRt++ +k++w++ 
   XP_008239931.1 104 RKPFTDEEDQMIIAAHAFHGNK-WAAIARLLP-GRTDNAIKNHWNST 148
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.4514798IPR017930Myb domain
SuperFamilySSF466891.46E-3049145IPR009057Homeodomain-like
SMARTSM007178.1E-1551100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2653105IPR009057Homeodomain-like
CDDcd001673.70E-145496No hitNo description
PfamPF139219.6E-1755114No hitNo description
PROSITE profilePS5129426.38999153IPR017930Myb domain
SMARTSM007175.3E-17103151IPR001005SANT/Myb domain
CDDcd001671.01E-12106149No hitNo description
Gene3DG3DSA:1.10.10.602.0E-24106152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEREMEAAYD AAATAAVEVD AEDGGDSGEE ATQAVAGGGV ESNRKSGRDR VKGPWSPEED  60
AILSRLVSKF GARNWSLIAR GIDGRSGKSC RLRWCNQLDP SVKRKPFTDE EDQMIIAAHA  120
FHGNKWAAIA RLLPGRTDNA IKNHWNSTLR RRCMDPDKIK LESGNTVEDV SLDKTKASSE  180
ETFSYGDVNS SKSMEGREVS SLEHMDCQYE DKGSTEGQFS HEVKEQPTLC RPAACISAFS  240
VYNHSDSQET GVSFPRIIPV QGPLVQVSNL DVNISKLLDG VYGERSIPDQ CGHGCCCANG  300
KNAQNSLLGP EFVDFSEPPS FPSFELAAIA TDISNLAWIK SGLENSSVRA MGDAADRTVP  360
HESQGQMGHF EESRMNNLFR FEERNDRLMG MKTNVLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-40491524107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239931.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239931.10.0PREDICTED: uncharacterized protein LOC103338495
SwissprotQ425751e-107MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A251NZR10.0A0A251NZR1_PRUPE; Uncharacterized protein
STRINGXP_008239931.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-109myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]