PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239919.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 330aa    MW: 36938.4 Da    PI: 7.3814
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239919.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l+d ++++G g+W++ +++ g++R++k+c++rw++yl
   XP_008239919.1 15 RGPWTPEEDRKLLDFIQLHGHGSWSSLPQKAGLKRCGKSCRLRWRNYL 62
                     89*********************************************7 PP
2Myb_DNA-binding53.26.9e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++  Ed+ +++++++lG++ W++Ia++++ +Rt++++k++w+++l
   XP_008239919.1  68 RGNFSLHEDQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNTHL 113
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0721062IPR017930Myb domain
SuperFamilySSF466896.6E-3112109IPR009057Homeodomain-like
SMARTSM007171.9E-151464IPR001005SANT/Myb domain
PfamPF002491.5E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-241669IPR009057Homeodomain-like
CDDcd001673.39E-121762No hitNo description
PROSITE profilePS5129425.13763117IPR017930Myb domain
SMARTSM007178.9E-1767115IPR001005SANT/Myb domain
PfamPF002492.1E-1568113IPR001005SANT/Myb domain
CDDcd001677.27E-1270113No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGKSTCFAAA SGIKRGPWTP EEDRKLLDFI QLHGHGSWSS LPQKAGLKRC GKSCRLRWRN  60
YLRPDIKRGN FSLHEDQTII QLHALLGNRW SAIAAHLPKR TDNEIKNYWN THLKKRLAKI  120
GFDPVTHKPK TAILGSANGD PKKLSNLSHI AQWESARLQA EARLSRESEL HKSSAHQLLH  180
DQTASLTHDH LHHQFPPLVP QCLDILRASA WESLISMSTK SSSSDADAPT NHINGGQNHV  240
SFGYHHDVHE HGVNIISNFE GPTSDHQFSS ITECDDSRAM SSMTTGSLGL NELIGQYCGK  300
ECSELFEALQ QYMGYEVEDG DAWTSLEQLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26151177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239919.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1506762e-59KJ150676.1 Prunus perscica disrupted R2R3-MYB transcription factor (PpeMYB25), partial sequence; and Ty-copia retrotransposon, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239919.10.0PREDICTED: myb-related protein Hv1-like
SwissprotQ9LE632e-88MY106_ARATH; Transcription factor MYB106
TrEMBLA0A251PCF10.0A0A251PCF1_PRUPE; Uncharacterized protein
STRINGXP_008239919.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-90myb domain protein 16