PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008239482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NF-YC | ||||||||
Protein Properties | Length: 238aa MW: 26082.2 Da PI: 4.9988 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.5 | 3e-56 | 50 | 154 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl XP_008239482.1 50 QLQMFWNYQrhdIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 144 89******99999********************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivprde+k XP_008239482.1 145 VDIVPRDEIK 154 *******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.64E-34 | 38 | 144 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.2E-37 | 64 | 136 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.5E-21 | 72 | 135 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDTNPNTTTT TTTTPNPTQQ QQQAQSSYPP TQSSVPAPPF HHLLQQQQQQ LQMFWNYQRH 60 DIEQVNDFKN HQLPLARIKK IMKADEDVRM ISAEAPVLFA KACELFILEL TIRSWLHAEE 120 NKRRTLQKND IAAAITRTDI FDFLVDIVPR DEIKDEAVGL GGMVGATASG VPYYYPPMGQ 180 PAGGPGGMMI GRPAVDPAAV YGVQPPSQAW QSVWQTAADD GSYGSGGSSG QGNLDGQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-54 | 58 | 150 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 128 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008239482.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008239482.1 | 1e-178 | PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 | ||||
Swissprot | Q9SMP0 | 1e-107 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | M5WN84 | 1e-138 | M5WN84_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239482.1 | 1e-177 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11071 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 5e-84 | nuclear factor Y, subunit C4 |
Publications ? help Back to Top | |||
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