PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008238368.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 191aa MW: 21983.3 Da PI: 9.0533

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008238368.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.9	2.1e-20	31	119	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn Y e+GF +r s++++ +++ge+t++++vC k+g++ +++ + ++rr+r t+tgCkakl + k+k ++k+ v l++ HnH+++ XP_008238368.1 31 NFYNMYDVEAGFGIRCSTTRTCTMTGEVTRKEYVCCKQGYALTKTVS--HKRRRRGCTQTGCKAKLAILKMKdKNKYIVVGLNEVHNHDMN 119 6**************************************999877..999************999989************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-18	31	119	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50811	8.536	67	119	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MECEGQVTPE VRLELKPKLR LEFDYCDDVF NFYNMYDVEA GFGIRCSTTR TCTMTGEVTR 60 KEYVCCKQGY ALTKTVSHKR RRRGCTQTGC KAKLAILKMK DKNKYIVVGL NEVHNHDMNT 120 VDNVHLLRSH RNLTESTKAY SADMSKVNIP VHKQLSLLEV QVGRLENVGF VKRDVYNYLR 180 DIRGEVIGHV A

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008238368.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008238368.1	1e-141	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008238368.1	1e-140	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14110	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-24	FAR1-related sequence 5