PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238205.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 514aa    MW: 55897 Da    PI: 4.4277
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238205.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.5e-36391302102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_008238205.1  39 FLSKTYDMVDDPATDQVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKS 124
                     9********************999*****************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_008238205.1 125 INRRKP 130
                     ***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-4033123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.85E-3635128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-6435128IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3239128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-213962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-217789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-2190102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MGGANNNGDD ASMAGGGAQQ AGLAPAPAPL LNSNAPPPFL SKTYDMVDDP ATDQVVSWSP  60
TNNSFVVWNP PEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGQKH  120
LLKSINRRKP AHGHSHQQPQ PSQGQNSVAA CVEVGKFGLE EEVERLKRDK NVLMQELIKL  180
RQQQQSTDNQ LQAMVQRLQG MEQRQQQMMS FLAKAVQSPS FLTQFVQQQN ESNRRIIEVN  240
KKRRLKQDEG GDSGTSDGQI VKYQPPVNEA AKAMLRQIMT TDTSSSRLES FNDTPDNILT  300
GNGSSSSSSL IDSGSSSSRA SGVTLQEVPL TSGLGSSSAI SEVQSSLQAA NSGTVTRAPF  360
SDINALVGAQ EAQSIPISQA GVIIPQLSQV PEMVPECLVD IPEENMAPDA GVGFIENMAS  420
DAGDGFIGDI LGLDGSMTID IDSIPPDPDI EALLKNWDQF LQSPEPDEMD STSAGVPMGN  480
EEQPSTENGW DKTQHNMDNL TEKMERLTSD TKGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-273712827129Heat shock factor protein 1
5d5v_B1e-273712827129Heat shock factor protein 1
5d5v_D1e-273712827129Heat shock factor protein 1
5hdg_A1e-27371288110Heat shock factor protein 1
5hdn_A1e-27371288110Heat shock factor protein 1
5hdn_B1e-27371288110Heat shock factor protein 1
5hdn_C1e-27371288110Heat shock factor protein 1
5hdn_D1e-27371288110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239246NKKRRLKQ
2240245KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238205.10.0PREDICTED: heat shock factor protein HSF8
SwissprotQ401521e-171HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A315AHW50.0A0A315AHW5_PRUYE; Heat shock factor protein HSF8
STRINGXP_008238205.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-126heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]