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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_008238205.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family |
HSF |
Protein Properties |
Length: 514aa MW: 55897 Da PI: 4.4277 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_008238205.1 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 115.9 | 2.5e-36 | 39 | 130 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96
Fl+k+y++++d+++++++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++
XP_008238205.1 39 FLSKTYDMVDDPATDQVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKS 124
9********************999*****************************************999.........****************** PP
XXXXXX CS
HSF_DNA-bind 97 ikrkks 102
i+r+k
XP_008238205.1 125 INRRKP 130
***986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009408 | Biological Process | response to heat |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 514 aa
Download sequence Send
to blast |
MGGANNNGDD ASMAGGGAQQ AGLAPAPAPL LNSNAPPPFL SKTYDMVDDP ATDQVVSWSP 60 TNNSFVVWNP PEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGQKH 120 LLKSINRRKP AHGHSHQQPQ PSQGQNSVAA CVEVGKFGLE EEVERLKRDK NVLMQELIKL 180 RQQQQSTDNQ LQAMVQRLQG MEQRQQQMMS FLAKAVQSPS FLTQFVQQQN ESNRRIIEVN 240 KKRRLKQDEG GDSGTSDGQI VKYQPPVNEA AKAMLRQIMT TDTSSSRLES FNDTPDNILT 300 GNGSSSSSSL IDSGSSSSRA SGVTLQEVPL TSGLGSSSAI SEVQSSLQAA NSGTVTRAPF 360 SDINALVGAQ EAQSIPISQA GVIIPQLSQV PEMVPECLVD IPEENMAPDA GVGFIENMAS 420 DAGDGFIGDI LGLDGSMTID IDSIPPDPDI EALLKNWDQF LQSPEPDEMD STSAGVPMGN 480 EEQPSTENGW DKTQHNMDNL TEKMERLTSD TKGV
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5d5u_B | 1e-27 | 37 | 128 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-27 | 37 | 128 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-27 | 37 | 128 | 27 | 129 | Heat shock factor protein 1 |
5hdg_A | 1e-27 | 37 | 128 | 8 | 110 | Heat shock factor protein 1 |
5hdn_A | 1e-27 | 37 | 128 | 8 | 110 | Heat shock factor protein 1 |
5hdn_B | 1e-27 | 37 | 128 | 8 | 110 | Heat shock factor protein 1 |
5hdn_C | 1e-27 | 37 | 128 | 8 | 110 | Heat shock factor protein 1 |
5hdn_D | 1e-27 | 37 | 128 | 8 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 239 | 246 | NKKRRLKQ |
2 | 240 | 245 | KKRRLK |
Functional Description ? help
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Source |
Description |
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |