PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236908.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 440aa    MW: 48500.3 Da    PI: 5.7268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236908.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.8e-10249296455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_008236908.1 249 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 296
                     8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-17243314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.23E-10243300No hitNo description
Gene3DG3DSA:4.10.280.103.9E-17245312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-7249296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MNRALPEMLN CMNAPGTFLA GNSTDMTVLE RQRARMKWHQ HEHNDPIQLH QQQQGYNFSG  60
NELSGVFSVP IPAGQAQGFM GLVCGDSAVK PDPCSENRWA ELGYGSCELV VNNNGAAGFE  120
EMINGHNNNS NISRTFSCPP TVAAEKKSND AVLSQKISSP AGKESFKKRK ADKVQSNKAV  180
AAEDDSTEKR MKGCAEEGDS KITEQTSTKN TNNDRESSGD TSKDNSKASE VQKPDYIHVR  240
ARRGQATDSH SLAERVRREK ISERMKYLQD LVPGCNKITG KAGMLDEIIN YVQSLQRQVE  300
FLSMKLAAVN PRLDFNIDDL FAKEMFPACA ANFQTIGMSS EMTNSAYVQF NPVQQMVSSC  360
GLDMGINSSD LALRRTISAP VSIPETFLDT SCFTQAPPTA IWDADLQNLF NVEFQQGRTT  420
PFQSQPFTGS IEASNLKMEM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236908.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236908.10.0PREDICTED: transcription factor bHLH63
TrEMBLM5VVW10.0M5VVW1_PRUPE; Uncharacterized protein
STRINGXP_008236908.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-69cryptochrome-interacting basic-helix-loop-helix 1