PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236411.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 400aa    MW: 41887.7 Da    PI: 8.7327
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236411.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.4e-3953113262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     +e++lkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+++
  XP_008236411.1  53 PEQSLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKRVR 113
                     68999*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2551105IPR003851Zinc finger, Dof-type
PfamPF027015.3E-3355111IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.50657111IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105995IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MMSSDNTPPG KPPPGTKGGE SLAAGGGGGG GASSRAKPTS SSSSGAKQQH PPPEQSLKCP  60
RCDSPNTKFC YYNNYSLTQP RHFCKTCRRY WTKGGALRNV PIGGGCRKNK RVRSSSSNSR  120
LSCSLDSKDS AGSSSSENMM LGGLKFFHGI SPAMDFQLGG LSSLPSRLHH NPSSGISYNN  180
NNNQFSAFGD VSGTSGLTIS TPLDTSASCN SFLGFNYPLT LGGGGGGGAG GGGDGFSATQ  240
NMMSSMNVHS SLASSIESLS SINQDLHWKL QQQRLAMLFG SGNDHDQSTQ TTQSQLEQQQ  300
KTQQIAPISL FQNLEVSSKA DHQHQHQVVG THGRREGASA SGDTATEWFF GNSYAPPVTP  360
TPTNSGGGNG GGGGNENTSN WQHGIQAWSS HDLQQYNALP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236411.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330035e-36AC133003.3 Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence.
GenBankAP0149595e-36AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126115e-36CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236411.10.0PREDICTED: dof zinc finger protein DOF5.7
TrEMBLA0A251NTA50.0A0A251NTA5_PRUPE; Uncharacterized protein
STRINGXP_008236411.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.14e-43Dof family protein