PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008236239.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27013.8 Da PI: 9.1079 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.9 | 2.3e-22 | 19 | 62 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +ie sn qvtfskRr g++KKA+EL++LC++e+a+i+fs+ +k XP_008236239.1 19 KIEKRSNLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPANK 62 699**************************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.619 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-31 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.32E-34 | 11 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-26 | 11 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-18 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-18 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-18 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MVIKIKKASQ GRQKIAIAKI EKRSNLQVTF SKRRSGLFKK ASELCTLCGV EIAIIVFSPA 60 NKPFSFGHPE VDSIVDRFIA RNPNPNPLGL AWSTDTTQEL AEAHRNSNVH ELNKQLTQIV 120 NQLEAERKQG EALDKMSKAS QNQCWWEMPV DELGLHELQI LKASVEELKR NVNKQANRIL 180 MESSYPSAAA NYSSSPLSMM KNIGGLVQRD IDDHYRFESK NPTDQIEPAY NFGYAGHGLF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 3e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_B | 3e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_I | 3e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_J | 3e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_A | 3e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_B | 3e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_C | 3e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_D | 3e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_I | 3e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_J | 3e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
5f28_A | 3e-15 | 11 | 82 | 2 | 73 | MEF2C |
5f28_B | 3e-15 | 11 | 82 | 2 | 73 | MEF2C |
5f28_C | 3e-15 | 11 | 82 | 2 | 73 | MEF2C |
5f28_D | 3e-15 | 11 | 82 | 2 | 73 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008236239.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008236239.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1L5YEJ2 | 1e-170 | A0A1L5YEJ2_PRUPE; MADS-box protein 21 | ||||
STRING | XP_008236239.1 | 1e-180 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-57 | AGAMOUS-like 62 |