PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236173.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 344aa    MW: 38281.5 Da    PI: 7.5396
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236173.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13167213455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++YIk+Lq
  XP_008236173.1 167 DHIIAERKRREKLSQRFIALSAMVPGL-----KKMDKASVLGDAIKYIKQLQ 213
                     699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.12163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-18167226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-11167213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-17167229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-13168217No hitNo description
SMARTSM003531.9E-15169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAISSIGGMS ELGMEDPYFI NQWHLNSLDE VSMLPLAAAF GENFNQSHFH PNFNLKTSMD  60
SSHSGIDRPM KQLKTDGWSS CKTDQQGSNP QVASSPNILS FVNSHSTNQM GVLKPKEEAA  120
VCSKSNNGLP SDILLSQSSF GNQSYLFKAS QGTKGVNTNT RLSTTQDHII AERKRREKLS  180
QRFIALSAMV PGLKKMDKAS VLGDAIKYIK QLQDKVKTLE EQTRKKNMES VVFVKKTQLF  240
ANDDNSSSEE NNSSGPFDET LPEIEARFCD NNVMIRIHCE KRKGVVEKTI AEVEKLQLKF  300
INSSVLTFGG CALDVTIIAQ MEVEFSLSVK ELVKNLRSAF DMFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-14167227869Transcription factor MYC2
5gnj_B4e-14167227869Transcription factor MYC2
5gnj_E4e-14167227869Transcription factor MYC2
5gnj_F4e-14167227869Transcription factor MYC2
5gnj_G4e-14167227869Transcription factor MYC2
5gnj_I4e-14167227869Transcription factor MYC2
5gnj_M4e-14167227869Transcription factor MYC2
5gnj_N4e-14167227869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176ERKRRE
2172177RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236173.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236173.10.0PREDICTED: transcription factor bHLH25-like
TrEMBLM5W4380.0M5W438_PRUPE; Uncharacterized protein
STRINGXP_008236173.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-65bHLH family protein