PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008234673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 219aa MW: 25374.5 Da PI: 8.2608 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.2e-19 | 33 | 87 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++ft+eq++ Le+ Fe ++++ +++ + A++lgL+ rqV +WFqNrRa++k XP_008234673.1 33 KNQRRFTDEQIRLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWK 87 56789*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.9 | 1.6e-39 | 34 | 125 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++rr+++eq++lLE+ Fe+++kLep+rKv++areLglqprqva+WFqnrRAR+k+kq+E+d+++L++ yd+l+++ e+L++e+++L ++++ XP_008234673.1 34 NQRRFTDEQIRLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRADYDNLASRFESLKEEKQSLLMQMEK 125 68************************************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.57E-19 | 22 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.945 | 29 | 89 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-18 | 32 | 93 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.2E-17 | 33 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.74E-16 | 33 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-19 | 37 | 87 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 60 | 69 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 64 | 87 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 69 | 85 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.3E-15 | 89 | 129 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MEKTECSEAQ NFGSVTTSLE PQATAKRKKA KSKNQRRFTD EQIRLLESIF EADSKLEPRR 60 KVQVARELGL QPRQVAIWFQ NRRARWKSKQ IEQDFRTLRA DYDNLASRFE SLKEEKQSLL 120 MQMEKLNELV GKPSQGLEGN IMADGSRLQE ELAPRGVIQS HKNNTSNDVG CHGDEIHELL 180 SMAHVDASSL SPQDWHRFDP SILFDQSRFT SSHWLNFWT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 89 | RRARWKSKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008234673.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF139497 | 0.0 | AF139497.1 Prunus armeniaca homeobox leucine zipper protein (HBLZP) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008234673.1 | 1e-163 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | Q9XH73 | 1e-156 | Q9XH73_PRUAR; Homeobox leucine zipper protein | ||||
STRING | XP_008234673.1 | 1e-162 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-49 | homeobox 7 |