PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233695.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 433aa    MW: 47400.1 Da    PI: 5.8236
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233695.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-174994147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
   XP_008233695.1 49 RGPWSPEEDAVLSRLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 94
                     89******************************.***********985 PP
2Myb_DNA-binding57.43.3e-18101145147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++++eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ 
   XP_008233695.1 101 RKPFSEEEDHIIVSAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 145
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.5914495IPR017930Myb domain
SuperFamilySSF466896.74E-3146142IPR009057Homeodomain-like
SMARTSM007174.1E-154897IPR001005SANT/Myb domain
PfamPF002491.1E-164994IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-2650102IPR009057Homeodomain-like
CDDcd001671.78E-145193No hitNo description
PROSITE profilePS5129426.02496150IPR017930Myb domain
SMARTSM007178.6E-16100148IPR001005SANT/Myb domain
PfamPF002497.7E-16101145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-23103149IPR009057Homeodomain-like
CDDcd001679.59E-12103146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MTVPNDAVSK QADDRPAESE LVRGTEAELI ELGDATELNE AALSSGKVRG PWSPEEDAVL  60
SRLVSKFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPCVK RKPFSEEEDH IIVSAHAIHG  120
NKWAAIARLL PGRTDNAIKN HWNSTLRRKC IDRGKFKPEP DMMEDASFDR TKASSEETLS  180
VGNISSFKTP EGREVLMDNR LDQLDERVQA KEGCGVAESN YHSTLLAGSR GHPTLLGESK  240
EQSSLCRPVA RVSAFSVYDP PSGLANTSTF SRIVPSHGPL VQTCKPDFGF GNFLEGVCNE  300
PMVPLRCGHG CCDPSEGHSQ SSLLGPEFVE YDEPPSFSSH ELISIATDLN KIAWIKSGLE  360
NNGTRITENA ASQRVSQGAT TTLQMGLSVH NSTNDQMRYE EGRNKLMGMM TEVLSTQVPR  420
QTFAMPTEVE GLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-39481496107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233695.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233695.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A251QM500.0A0A251QM50_PRUPE; Uncharacterized protein
STRINGXP_008233695.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-109myb domain protein 109