PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232572.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 396aa    MW: 44972.1 Da    PI: 5.9147
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232572.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014259281123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k+F++   L  H  +H
  XP_008232572.1 259 YKCETCNKVFKSYQALGGHRASH 281
                     9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.35E-7326No hitNo description
PfamPF139124.6E-7327IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.887431IPR007087Zinc finger, C2H2
SMARTSM003550.052426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-4246283IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.35E-7254281No hitNo description
PfamPF139121.3E-11259283IPR007087Zinc finger, C2H2
SMARTSM003550.01259281IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.699259286IPR007087Zinc finger, C2H2
PROSITE patternPS000280261281IPR007087Zinc finger, C2H2
PfamPF139123.1E-9313334IPR007087Zinc finger, C2H2
SMARTSM0035580314334IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MERHKCKLCM RSFSNGRALG GHMRSHMMNL PIPAKPELEE EEEVPPGRNQ DQVQVLIDEL  60
AESASASSSS SEEEDEHGEE GEEGEEGMFY GLRENPKRSI RLVDPEFSFA VDAGSVVLQD  120
RESETESSKN PTRRRSKRTR KSAMLELHHQ YQHHHQKLEA LKKIKLKNKV ISSSKTDSFE  180
PEPVSSISDA TTEEDVAFCL MMLSRDKWKK QDQQHHQQQH QHEQEQDQDD EAERSMEDSD  240
ESEEQLVKFP RTRTTRGKYK CETCNKVFKS YQALGGHRAS HKKIKASNPN PIYDHELEQE  300
NNAGASSVAE RKTHECPVCF RVFSSGQALG GHKRXXXXXX XXXXXAAAAA THVKNLNKLG  360
DNLIDLNLPA PVEDDEISQI ELSAVSDAEF VNPIRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232572.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1938834e-46KJ193883.1 Corylus avellana microsatellite BR245 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232572.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLM5X3M60.0M5X3M6_PRUPE; Uncharacterized protein
STRINGXP_008232572.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-48C2H2-like zinc finger protein