PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008232178.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 233aa MW: 26141.3 Da PI: 7.9452 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.3 | 4.9e-12 | 118 | 206 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsefelvv 94 f+ vlt+ + + +lv+p +f ++ +s t+ + +g+ We+ + ++s++ l +Wk F+ +n+Lk+gD +vF+ l+ s+++lv+ XP_008232178.1 118 FDVVLTKTNIEHLYQLVVPGRFSATLP---SCS-IPTVLTFRGKNWEMIY--HGSSSHKRLD-NWKAFAIDNNLKVGDACVFEqLEC-SSTRLVF 204 556677777777789999999987663...344.4577889*********..8888877787.********************5444.5555554 PP EE CS B3 95 kv 96 +v XP_008232178.1 205 RV 206 43 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-14 | 115 | 207 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-16 | 115 | 207 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.07E-16 | 116 | 210 | No hit | No description |
Pfam | PF02362 | 6.7E-10 | 118 | 205 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.433 | 118 | 212 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0018 | 118 | 212 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MIRVHCWRCV GGRRFSLCFL VFISSVFLSD VAFECCRSSC ASSFFSSHGF SSKGFLGFVK 60 KGTKIEGKRA GVINIGTPTL LINRLMKGEP QMGDLLTSNP VIELEGDEFW PLSWKPFFDV 120 VLTKTNIEHL YQLVVPGRFS ATLPSCSIPT VLTFRGKNWE MIYHGSSSHK RLDNWKAFAI 180 DNNLKVGDAC VFEQLECSST RLVFRVQILR GDIPSEFLDK LDGDNVDAPI VLE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008232178.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008232178.1 | 1e-172 | PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X1 | ||||
TrEMBL | M5X1G4 | 1e-96 | M5X1G4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008232178.1 | 1e-171 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9722 | 26 | 40 |