PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008231910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 26016.1 Da PI: 6.1681 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.2e-09 | 19 | 65 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT Ed+l+ +a ++ + +W++Ia++++ g+t++++ +++ ++ XP_008231910.1 19 PWTRFEDKLFEQALVRFSEDlpdRWERIAEEVP-GKTPEEVLEHYETL 65 7*****************99*************.**********9875 PP | |||||||
2 | Myb_DNA-binding | 44.8 | 2.8e-14 | 115 | 159 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky XP_008231910.1 115 PWTEQEHKLFLIGLKKFGKGDWRSISRNVVVTRTPTQVASHAQKY 159 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.584 | 15 | 69 | IPR017884 | SANT domain |
SMART | SM00717 | 3.5E-8 | 16 | 68 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.35E-12 | 18 | 74 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-6 | 18 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.1E-8 | 19 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.44E-8 | 19 | 66 | No hit | No description |
PROSITE profile | PS51294 | 19.517 | 108 | 164 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-16 | 110 | 165 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-17 | 111 | 163 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-10 | 112 | 162 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-11 | 112 | 158 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.12E-9 | 115 | 160 | No hit | No description |
Pfam | PF00249 | 4.0E-12 | 115 | 159 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MFQETAPCWS SMAQSASAPW TRFEDKLFEQ ALVRFSEDLP DRWERIAEEV PGKTPEEVLE 60 HYETLVHDVL EIDSGRVELP SYADDSVVGW DTASQISFGS KLNKHGEPER KKGTPWTEQE 120 HKLFLIGLKK FGKGDWRSIS RNVVVTRTPT QVASHAQKYF LRQSSVKKER KRSSIHDITT 180 VESNSVAAPA DRNWIPPPGV PAQQPPLQQP QGHLPDQGGS MGYQDFGYPM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-17 | 14 | 82 | 5 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008231910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008231910.1 | 1e-171 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 9e-60 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | M5WIS8 | 1e-168 | M5WIS8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008231910.1 | 1e-171 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6068 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 9e-70 | MYB family protein |
Publications ? help Back to Top | |||
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