PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008230979.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | AP2 | ||||||||
Protein Properties | Length: 408aa MW: 46018.9 Da PI: 8.3858 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49 | 1.6e-15 | 70 | 129 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g XP_008230979.1 70 SRFRGVSRHRWTGRFEAHLWDkLSWNAtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 129 789******************888888876447*************************98 PP | |||||||
2 | AP2 | 52.3 | 1.4e-16 | 172 | 223 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g XP_008230979.1 172 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 223 89****99**********99966...3.6*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.52E-18 | 70 | 139 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-15 | 70 | 138 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-12 | 70 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.164 | 71 | 137 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-14 | 71 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-23 | 71 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-5 | 72 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.80E-24 | 172 | 233 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-18 | 172 | 233 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.1E-12 | 172 | 223 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-18 | 173 | 232 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-26 | 173 | 237 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.953 | 173 | 231 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-5 | 213 | 233 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MEMMMVKNEE NTRRRRLSTV DREAQESRCV KRRRRDPAAV AVSCDNSQSE KHLPQKPADQ 60 TSATTTKRSS RFRGVSRHRW TGRFEAHLWD KLSWNATQKK KGKQVYLGAY DEEESAARAY 120 DLAALKYWGT STFTNFAISD YEEEIEIMQT VTKEEYLASL RRKSSGFSRG VSKYRGVARH 180 HHNGRWEARI GRVFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGINAVTNF DLSSYIRWLK 240 PRADYPIATQ EPETVAEPQN ILPFMANSYI PTEEPSFSHT NPFASGYLSS PQKQKVTRSS 300 VPLNTGSKSS SPTALGLLLQ SSIFRELVQK NANFSEDESA DGEETKNQTQ VGSDDEFNGI 360 FYDGIGDNPF VCSSNSDGDN SWSSIASTIL LSQPSKANAS SDSLFFFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 34 | RRRLSTVDREAQESRCVKRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008230979.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008230979.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | M5X933 | 0.0 | M5X933_PRUPE; Uncharacterized protein | ||||
STRING | XP_008230979.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2198 | 32 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 4e-96 | AP2 family protein |