PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228850.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 359aa    MW: 40090 Da    PI: 8.4172
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228850.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.6e-1648107155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g
  XP_008228850.1  48 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAARAYDLAALKYWG 107
                     57*******************999955656446*************************98 PP
2AP251.23.1e-16150201155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_008228850.1 150 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 201
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-1748116IPR016177DNA-binding domain
PfamPF008474.0E-1248107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1649115IPR001471AP2/ERF domain
SMARTSM003804.1E-2849121IPR001471AP2/ERF domain
PROSITE profilePS5103220.58749115IPR001471AP2/ERF domain
PRINTSPR003674.1E-65061IPR001471AP2/ERF domain
CDDcd000183.72E-23150211No hitNo description
SuperFamilySSF541711.05E-17150211IPR016177DNA-binding domain
PfamPF008475.6E-12150201IPR001471AP2/ERF domain
PROSITE profilePS5103218.334151209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17151210IPR001471AP2/ERF domain
SMARTSM003801.2E-24151215IPR001471AP2/ERF domain
PRINTSPR003674.1E-6191211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAKTSQQNQK NTASSNNSNS NNTNSTATTK VKRTRKSVRR DSPPQRSSIY RGVTRHRWTG  60
RYEAHLWDKN CWNESQNKKG RQVYLGAYDD EEAAARAYDL AALKYWGQDT ILNFPLDTYP  120
EELKEMESQS KEEYIGSLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG  180
TYATQEEAAT AYDMAAIEYR GLNAVTNFDL SRYIKSLCPN NQNVPNNPQP NPNGDLGPTQ  240
NPNSNLGLGF IPNYHSSSSS ASESTVALPR PGNGASASSA LGLLLQSPKF KEMLERTSTS  300
STDCSSTLSE PDIPRRSFPD DIQTYFDCQD LNSYAEGDDI IFGGLHSFAS PVFHCELDA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228850.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-124AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A314UUX40.0A0A314UUX4_PRUYE; AP2-like ethylene-responsive transcription factor
STRINGXP_008228850.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.19e-99ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]