PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008225482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NF-YC | ||||||||
Protein Properties | Length: 221aa MW: 25077.5 Da PI: 10.3456 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 44.5 | 3.3e-14 | 111 | 203 | 7 | 99 |
NF-YC 7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 e+++e+++++k ++P+ r+k+i+++++ +is +a l+ ka e f+ ++ + + + ++++l ++++v++ + +dfl d vp++ XP_008225482.1 111 EEEVEEKEEVKSYTFPMERVKRIIRSEDSEMRISHDAVFLVNKATEKFLQKFCEDAHACCVKDRKKSLAYKHLSSVVSKRKRYDFLSDYVPEK 203 46799***********************999***********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.47E-18 | 105 | 202 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-15 | 124 | 187 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.5E-22 | 125 | 202 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MATPRKATTP KKSKETKKPS SKAITPKKTQ ETKNPSIKKT PETKKPGTKK TISDKNQTSN 60 GNVSDSDVEE IPSSSSESLK DTKQDGGKIT KTPTPKSKHS NKKRKQKQEE EEEVEEKEEV 120 KSYTFPMERV KRIIRSEDSE MRISHDAVFL VNKATEKFLQ KFCEDAHACC VKDRKKSLAY 180 KHLSSVVSKR KRYDFLSDYV PEKVKAEDAL AKRKLAEAKA D |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 18 | RKATTPKKSKETKKP |
2 | 173 | 191 | RKKSLAYKHLSSVVSKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008225482.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008225482.1 | 1e-157 | PREDICTED: DNA polymerase epsilon subunit C isoform X1 | ||||
TrEMBL | M5W7G1 | 1e-124 | M5W7G1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008225482.1 | 1e-156 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 1e-29 | nuclear factor Y, subunit C10 |