PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224939.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 884aa    MW: 97184.4 Da    PI: 7.4422
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224939.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71e-18333432198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++
  XP_008224939.1 333 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRLE-PEGK 425
                     89**************************555566778***************9989999999***9.********************766.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  XP_008224939.1 426 LVMGFRK 432
                     7777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.41E-20330432IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-31330440IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-22331432No hitNo description
PfamPF023624.4E-16333432IPR003340B3 DNA binding domain
PROSITE profilePS5086311.378333434IPR003340B3 DNA binding domain
SMARTSM010194.8E-21333434IPR003340B3 DNA binding domain
PROSITE profilePS5105014.191561611IPR011124Zinc finger, CW-type
PfamPF074963.4E-12566608IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MSSSSSKVCY NSECKELKSE HPRKGWRLRT GEYAELCDRC YLAYEEGRFC ETFHMNAAGW  60
RCCESCGKRV HCGCIVSSHA FTLLDPGGVE CMTCARKNFV LTPNPAWPTS MFFHSPLSER  120
LKDLSVKNWT HLAGSGPVPW RQAPSLFNSS IPSSELHTRV PYEVDVSTGI NKLNASERIF  180
VSSMEKKKVE DFSERLMKVN LTISTQESLE NGKPGNNREE QSSSCLNISQ QSASLKEDPS  240
TPQFGPYGSV SETNAQVGVT GSNLRPTLPL AKQFNGNLQN GVESSGDTQI RNARPRADAR  300
GRNQLLPRYW PRFTDQELQQ ISGDKNSVIT PLFEKMLSAS DAGRIGRLVL PKKCAEAYFP  360
PISQPEGLPL KVQDSKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDIVTFSRL  420
EPEGKLVMGF RKASTAPPSD QENETNKASN GVSALADAEL ADPSSWSKVD KSGYIAKEAL  480
GSKSLISRKR KNSTLGSKSK RLKIENEDLI ELKLTWEEAQ GLLRAPANHI PTVVVIEGFE  540
IEEYEDAPIL GMPTIYATGS AGEKIQWAQC EDCFKWRKLP MNALLPSKWT CSDNSWDPER  600
SSCSAAQDLT AEQLEDLLPS HSTVTSKKMK AAKQDPDNIE ALEGLDTLAN LAILGEGESL  660
PASAQATTKH PRHRPGCSCI VCIQPPSGKG PKHKQTCTCN VCLTVKRRFR TLMMRREKKQ  720
SEKEAESTRK KQQQQQLVVI DKLDDDTPIC CNAGSSSPNQ KKEVLELSDD DLNRTKSSTP  780
PFKGQIDLNI QPEREEELSP GSDSGSMMKL LQDATERYLK QQRLSSSGGS ENSSGNRSQQ  840
VGGEAGGGEP LSNGVTLGSS NHDGGNDCPA TLSIKASASM TATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-653114361126B3 domain-containing transcription repressor VAL1
5yzz_C2e-653114361126B3 domain-containing transcription repressor VAL1
5z00_C2e-653114361126B3 domain-containing transcription repressor VAL1
5z00_G2e-653114361126B3 domain-containing transcription repressor VAL1
5z00_K2e-653114361126B3 domain-containing transcription repressor VAL1
5z00_M2e-653114361126B3 domain-containing transcription repressor VAL1
6j9a_A2e-653114362127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1488502KRKNSTLGSKSKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008224939.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224939.10.0PREDICTED: B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A251PF880.0A0A251PF88_PRUPE; Uncharacterized protein
STRINGXP_008224939.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-163HSI2-like 1