PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223475.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CAMTA
Protein Properties Length: 1021aa    MW: 114485 Da    PI: 7.6364
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223475.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.33.9e-55201353117
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e k+rwl++ ei++iL nf+++elt++++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+v+vl+cyYah+e+n++fqr
  XP_008223475.1  20 QEaKERWLRPAEICEILRNFQNFELTADPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNSNFQR 114
                     5559******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylev 117
                     r+yw+L+++l++ivlvhy++v
  XP_008223475.1 115 RSYWMLDMHLQHIVLVHYRNV 135
                     *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.42115141IPR005559CG-1 DNA-binding domain
SMARTSM010764.5E-7718136IPR005559CG-1 DNA-binding domain
PfamPF038592.7E-4921135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.4E-7443532IPR013783Immunoglobulin-like fold
CDDcd001021.72E-5444532No hitNo description
PfamPF018331.1E-6445530IPR002909IPT domain
SuperFamilySSF812961.27E-18445531IPR014756Immunoglobulin E-set
CDDcd002044.67E-12598733No hitNo description
SuperFamilySSF484036.22E-15624736IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.7E-15635737IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.433641735IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.297674706IPR002110Ankyrin repeat
SMARTSM002480.066674703IPR002110Ankyrin repeat
SMARTSM00248540713742IPR002110Ankyrin repeat
SuperFamilySSF525403.01E-8783899IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.37848870IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.425849878IPR000048IQ motif, EF-hand binding site
PfamPF006120.0069851869IPR000048IQ motif, EF-hand binding site
SMARTSM000151.4E-4871893IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.615872896IPR000048IQ motif, EF-hand binding site
PfamPF006123.3E-5874893IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1021 aa     Download sequence    Send to blast
MADTRKYLPT QQLDLPQILQ EAKERWLRPA EICEILRNFQ NFELTADPPV RPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNS NFQRRSYWML  120
DMHLQHIVLV HYRNVGEAYQ SGVPCLLTDP GSQVASPQSV SAPFSAQANS PAPTGQTSFA  180
SSPNRVDWNG KTLSTEFEDV DSGGDAGTSS VAQTMFGSVL HNASLRSQVG GFPESFRDPL  240
SSWYAGPKFA HGAGSSIWNG MDSSTRNERS MHDQNLFVEA PNRADFITHK LTDARLDVDC  300
RVNNVTCVDK LTTEIDVQVA TASSQREAQV SKEHDFNVFH PQVQDYSDPQ VVVNSSNQVE  360
ENSRDGGMRN AESVELKKLD SFGRWMDKEI GVDCDDSLMA SDSGNYWSPL DAENGDKEVS  420
SLSHHMHLDI ESLGPSLSQE QLFSIHDFSP DWAYSETETK VLIVGSFLGS KKHTTETKWG  480
CMFGEIEVSA EVLSNNVIRC QTPLHAPGCV PFYVTCRNRL ACSEVREFEY REKPIGNTSK  540
DDELRFQIRL AKLLSLGSER KWLECTALDC DQCKLKSSIF SMRNNRESDW ERIDGASVAC  600
NSDHLTHRDV LIQNLLKDRL CEWLVCKVHE GGKGPHVLDN EGQGVLHLTA ALGYEWAMGP  660
IIASGISPNF RDARGRTGLH WASYFGREET VIALLRLGAA PGAVKDPTSA FPGGQTAADL  720
ASSRGHKGIA GYLAEADLTS HLETLTMNEN IVNNVAATIA AEKAIETAEV IATDVVVDEQ  780
YSLKSSMAAV RKSAHAAALI QEAFRTRSFR QRQLTKSGTD VYEVQSHDLI ARRSLKRVQK  840
FAHYEDYLHV AAALKIQQNY RGWKGRKDYL KIRDRIVKIQ AHVRGHQVRK NYKKVVWSVG  900
ILEKVILRWR RKGAGLRGFR VEKAIEDVSS EVKKNDDYEF LSVGRKQKYA GVEKALSRVR  960
SMARQPEARE QYMRLLSKFE KLKMADGESP ASNQIESSTM SSNFMEAKLP IIFLPVSKRP  1020
P
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223475.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223475.10.0PREDICTED: calmodulin-binding transcription activator 2-like
TrEMBLA0A251QVY80.0A0A251QVY8_PRUPE; Uncharacterized protein
STRINGXP_008223475.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.21e-163signal responsive 1