PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008221977.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARR-B
Protein Properties Length: 616aa    MW: 68975.2 Da    PI: 6.0912
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008221977.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like764.9e-24199252155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_008221977.1 199 KARVVWSVDLHQKFVKAVHQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 252
                     68*******************.9*******************************8 PP
2Response_reg81.43e-27191271109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k  y ev+++  +++al+ll+ek+  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ G
  XP_008221977.1  19 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALNLLREKKdgYDIVVSDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHG 111
                     89*********************.***************999999**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ ++el++
  XP_008221977.1 112 ACDYLLKPIRMKELRN 127
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363929.2E-1481586IPR017053Response regulator B-type, plant
SuperFamilySSF521726.4E-3516139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.9E-4416140No hitNo description
SMARTSM004482.5E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.13418133IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.5E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.92E-3020133No hitNo description
Gene3DG3DSA:1.10.10.601.3E-27197257IPR009057Homeodomain-like
SuperFamilySSF466894.03E-17197256IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-21199252IPR006447Myb domain, plants
PfamPF002496.6E-8201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MDSSFSSPRN DSFPAGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCGLAR DALNLLREKK  60
DGYDIVVSDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVFRKKIHEI RDIESHESIE GIQLIRNGSD QYDEGYFFSA EDLASSRKRK  180
DVDSKYDDKD FSDCSSTKKA RVVWSVDLHQ KFVKAVHQIG FDKVGPKKIL DLMNVPWLTR  240
ENVASHLQKY RLYLSRLQKE NDIKSSFGGT KHSDYSSKDL QGILSVQNSI NIQQNDVAHG  300
SYRFSGNNLV AQNADPKSNE GDIKGIVSEP VAEPKKGTTG NIPDSQKTRS SQMDFNSSYA  360
ETKKGLVGNV PDSQKIRSSQ MRVNHSFASV ESEVNLTAFD STIPATYSWN QIQLEKEHKP  420
LIQLNNGFSK PLLPGPQHHF QADQLQSIPS ISSRPSIPGG DVTGSSKSKP SYSEYTNHHG  480
SRVSPTISPT ISATDSFPGQ TKSCVVDHQV SETISTSTSN MKNQGINLST DLESAHRNLI  540
LGSTSPFASL DDEFQICWYQ GDCYGMNLEL QNVEFSEYTD PTHVTEVPAH LYDALRFEYP  600
CDPSEYSVLD QGLFIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17195257163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008221977.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008221977.10.0PREDICTED: two-component response regulator ARR11
TrEMBLA0A251R2A30.0A0A251R2A3_PRUPE; Two-component response regulator
STRINGXP_008221977.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-137response regulator 11