PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008221605.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 346aa MW: 38907.8 Da PI: 7.9138

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008221605.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.3	3.6e-33	21	75	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl XP_008221605.1 21 KPRLKWTPELHQRFVEAVNQLGGADKATPKSLMRVMGIHGLTLYHLKSHLQKYRL 75 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.61	18	78	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-31	19	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.53E-17	20	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.5E-23	21	76	IPR006447	Myb domain, plants
Pfam	PF00249	3.9E-9	23	74	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-22	119	165	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGLLQNMQNQ NMNLVLSTDA KPRLKWTPEL HQRFVEAVNQ LGGADKATPK SLMRVMGIHG 60 LTLYHLKSHL QKYRLGKSQQ SENCTDVKQE DYKEIQSSDD HFDTDISDET HCQINESLQI 120 AESLQLQMEV QRKLHEQIEV QRHLQLRIEA QGKYLQTVLK KAQETLSGYS SSSVGVELAK 180 AELTQLVSMV NNGCPSSSFS ELTETGTSSL KYIERKQMRG SMESSLTSSE SSGRKEEKQP 240 MHKHGGDPEK SNTTCVELPL MDIHPENKPW NNVTNNHVIG RKRSSSPISD GICVEQPISK 300 RTPTQRDKSG QHLRKSGLSA TIDLNRKYQN DIDSGPKVID LNCKGI

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGLLQNMQNQ NMNLVLSTDA KPRLKWTPEL HQRFVEAVNQ LGGADKATPK SLMRVMGIHG  60
LTLYHLKSHL QKYRLGKSQQ SENCTDVKQE DYKEIQSSDD HFDTDISDET HCQINESLQI  120
AESLQLQMEV QRKLHEQIEV QRHLQLRIEA QGKYLQTVLK KAQETLSGYS SSSVGVELAK  180
AELTQLVSMV NNGCPSSSFS ELTETGTSSL KYIERKQMRG SMESSLTSSE SSGRKEEKQP  240
MHKHGGDPEK SNTTCVELPL MDIHPENKPW NNVTNNHVIG RKRSSSPISD GICVEQPISK  300
RTPTQRDKSG QHLRKSGLSA TIDLNRKYQN DIDSGPKVID LNCKGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-20	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008221605.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008221605.1	0.0	PREDICTED: uncharacterized protein LOC103321568
Swissprot	F4I274	2e-88	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A314V065	0.0	A0A314V065_PRUYE; Uncharacterized protein
STRING	XP_008221605.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5218	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	1e-87	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]