PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008221522.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 554aa MW: 62189.2 Da PI: 4.3138

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008221522.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.8	4.3e-07	262	309	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 rW++eE+e ++++v + Wk + ++ R+ +++s+++++ XP_008221522.1 262 RWSEEEEETFLEVVYSNPASvgrnFWKQLSVVFP-SRSKRELVSYYFNV 309 9***********9999889999******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0039	259	312	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.388	262	310	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MGFKRPFDDV DFQELPFKHP RQLEFSDKLA PFSDAVSCYG APRKTYVSGE DGNVVGKSQW 60 LEVLEKYTVN ENSTPANKVI GTPFSLTTRS CREEEVGPGP DAYLPPAGDF EFDFPRRTFF 120 PFKDVSSSLA DRSPRKPVPV GPDHQARIPT WTGRVKCLDQ TDESNLNRVS LHSLESEKVV 180 NNASEEKLLG TSVIPMPDSN LSALKCDKVG LGRTDCSCLD PGTVRCVQKH VMDAREELRR 240 TLGNEKFVKL GFYDMGEEVA RRWSEEEEET FLEVVYSNPA SVGRNFWKQL SVVFPSRSKR 300 ELVSYYFNVF MLRRRAVQNR SNILEIDSDD DEWHGDNGGS IDRRVAEYDE DYVIESRVYQ 360 DDHVGHEEDY SDEDDSDDDD VDDDGSDGDG DGGHVKRDSS EEDGGIDNME SYMLKSVDDG 420 KFDIVSQHGE KTSGCTREEF DFQDDSCVSF EFQSNMHESC DRIDAGAAGS ALQVTGFRND 480 RSKCLHGQPD ASSDVVGHAY LLEPCDAKVW DARFPLDAMK GVDVLPTWSM IEEIFDEGMG 540 DYKTRDGQKG PASG

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MGFKRPFDDV DFQELPFKHP RQLEFSDKLA PFSDAVSCYG APRKTYVSGE DGNVVGKSQW  60
LEVLEKYTVN ENSTPANKVI GTPFSLTTRS CREEEVGPGP DAYLPPAGDF EFDFPRRTFF  120
PFKDVSSSLA DRSPRKPVPV GPDHQARIPT WTGRVKCLDQ TDESNLNRVS LHSLESEKVV  180
NNASEEKLLG TSVIPMPDSN LSALKCDKVG LGRTDCSCLD PGTVRCVQKH VMDAREELRR  240
TLGNEKFVKL GFYDMGEEVA RRWSEEEEET FLEVVYSNPA SVGRNFWKQL SVVFPSRSKR  300
ELVSYYFNVF MLRRRAVQNR SNILEIDSDD DEWHGDNGGS IDRRVAEYDE DYVIESRVYQ  360
DDHVGHEEDY SDEDDSDDDD VDDDGSDGDG DGGHVKRDSS EEDGGIDNME SYMLKSVDDG  420
KFDIVSQHGE KTSGCTREEF DFQDDSCVSF EFQSNMHESC DRIDAGAAGS ALQVTGFRND  480
RSKCLHGQPD ASSDVVGHAY LLEPCDAKVW DARFPLDAMK GVDVLPTWSM IEEIFDEGMG  540
DYKTRDGQKG PASG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008221522.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008221522.1	0.0	PREDICTED: uncharacterized protein LOC103321495
TrEMBL	A0A251R4K6	0.0	A0A251R4K6_PRUPE; Uncharacterized protein
STRING	XP_008221522.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2153	8	10