PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008221374.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 571aa MW: 62181.6 Da PI: 7.1527

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008221374.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00028	467	499	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A++YIk Lq XP_008221374.1 467 DRITALQQIVSPF-----GKTDTASVLYEAIQYIKFLQ 499 6788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.29	449	498	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-8	464	505	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-9	464	507	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.23E-4	467	503	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MQASTLILNQ TPPLVLKIAI SSSSPQLAQP NWWDLHAAAG TGAAGSQLSS WSNLGINPWQ 60 PQQPNQKYSN SSNNCDDVDQ DVSISSTSFT NASNHSSLSV DSSRRLQVAD QRSASPNNDM 120 INGEQVSDNH IWNHVLLSVN GNNDLHHNDH DVGENFLDAL SSKSLSTDHV MYEPACDYLK 180 KLDNSTWEFT KYVSAASNNF NSFEKQLNGG FMENNNMNNN VNIENERLTK LSNLVSTWSI 240 APPEPQLVMD HDHHHYLKPQ AFINNDSTSC DAQMGNNNIT NRNSGSSLFS CYGSKVEAAC 300 VGGGGGGGGA LHGITPSFGN NNNGIEYQIG LNNVNAMVAD HHNGKYLYGN GSILPDSYSS 360 CGATSAGARN FADVISFSSR LGNKSALVDS HAPKPCFKSS NLSDQYSKKQ AASTRVSSGR 420 GQGIANEGKK KRTDDTSSET VLKKPKQETS TVSSSVKMQA PKVKLGDRIT ALQQIVSPFG 480 KTDTASVLYE AIQYIKFLQD QVHVLLSSPY LKTNSHKDPW ATDRKDHKGD VKVDLKNKGL 540 CLVPISCTPQ VYRENTGSDY WTPTYRGCLY R

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MQASTLILNQ TPPLVLKIAI SSSSPQLAQP NWWDLHAAAG TGAAGSQLSS WSNLGINPWQ  60
PQQPNQKYSN SSNNCDDVDQ DVSISSTSFT NASNHSSLSV DSSRRLQVAD QRSASPNNDM  120
INGEQVSDNH IWNHVLLSVN GNNDLHHNDH DVGENFLDAL SSKSLSTDHV MYEPACDYLK  180
KLDNSTWEFT KYVSAASNNF NSFEKQLNGG FMENNNMNNN VNIENERLTK LSNLVSTWSI  240
APPEPQLVMD HDHHHYLKPQ AFINNDSTSC DAQMGNNNIT NRNSGSSLFS CYGSKVEAAC  300
VGGGGGGGGA LHGITPSFGN NNNGIEYQIG LNNVNAMVAD HHNGKYLYGN GSILPDSYSS  360
CGATSAGARN FADVISFSSR LGNKSALVDS HAPKPCFKSS NLSDQYSKKQ AASTRVSSGR  420
GQGIANEGKK KRTDDTSSET VLKKPKQETS TVSSSVKMQA PKVKLGDRIT ALQQIVSPFG  480
KTDTASVLYE AIQYIKFLQD QVHVLLSSPY LKTNSHKDPW ATDRKDHKGD VKVDLKNKGL  540
CLVPISCTPQ VYRENTGSDY WTPTYRGCLY R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008221374.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008221374.1	0.0	PREDICTED: transcription factor bHLH111
TrEMBL	M5XDY8	0.0	M5XDY8_PRUPE; Uncharacterized protein
STRING	XP_008221374.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10116	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	3e-54	bHLH family protein