PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220719.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 263aa    MW: 28022.8 Da    PI: 6.1406
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220719.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.52.9e-383392362
          zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    ++ l+cprCdstntkfCyynny+l+qPr+fCk+CrryWt+GG+lr+vPvGgg+rkn k+s
  XP_008220719.1 33 TDPLHCPRCDSTNTKFCYYNNYNLAQPRHFCKSCRRYWTQGGTLRDVPVGGGSRKNSKRS 92
                    56789***************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-233084IPR003851Zinc finger, Dof-type
PfamPF027012.0E-333590IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9193690IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103874IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0042545Biological Processcell wall modification
GO:0045787Biological Processpositive regulation of cell cycle
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MPFESEDNNQ KPPSTTTTTK VQQSMGHQPP PQTDPLHCPR CDSTNTKFCY YNNYNLAQPR  60
HFCKSCRRYW TQGGTLRDVP VGGGSRKNSK RSRSTTCSSS SCSPSSSSLT QEVTSVATVK  120
PVSLSAEVKP EPASDVDHLM DLNENVVGNG GFTSLLNSQG PPPPGFLALG GYGYGYGYGS  180
AFGHGLDEVG DAFGHGGKGV WAFPEVGDFP STVIDHNNNN GAPSGCNTWQ MTTSADGGFV  240
DGDCFAWPEL EISMMPASGK AFK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00402DAPTransfer from AT3G50410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220719.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6629224e-51KP662922.1 Cajanus cajan Dof38 (Dof38) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220719.10.0PREDICTED: dof zinc finger protein DOF3.4
TrEMBLA0A251RA120.0A0A251RA12_PRUPE; Uncharacterized protein
STRINGXP_008220719.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28013168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.13e-35OBF binding protein 1