PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220242.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 389aa    MW: 43512.7 Da    PI: 7.513
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220242.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35251172103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sw e+  +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++
  XP_008220242.1  25 FLTKTYQLVDDPATDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCE 110
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_008220242.1 111 IHRRKTA 117
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.4E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.05E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MALMMDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDAT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPH  120
QVGFSHHHHH HHHNPHSPLG INGHHHPSFF PFPSSGSISP SDSDEPPNWC DSDSPPLPSP  180
TGGINNHNNN NNNFMNINNA SVTGLAEDNE RLRRSNSVLM SELAHMRKLY NDIIYFVQNH  240
VKPVAPSNSY PSSLLLSNPP PNSMAPAATA TKPSNFNQLL GYYPAPATNA KQTPHMSTTI  300
HHHVMNSSSP SNTTSKSSSV TILEDQQQPS SNGCKNTKLF GVPLLHSKKR LHPEEYGSNH  360
GTSMMEASKA RLILEKDDLG LHLMPPSAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-212111717123Heat shock factor protein 1
5d5u_B3e-212111626131Heat shock factor protein 1
5d5v_B3e-212111626131Heat shock factor protein 1
5d5v_D3e-212111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220242.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768816e-85AK376881.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3143C10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220242.10.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-114HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLM5XNJ80.0M5XNJ8_PRUPE; Uncharacterized protein
STRINGXP_008220242.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-100heat shock transcription factor B4